Hb_000720_010

Information

Type -
Description -
Location Contig720: 32516-34134
Sequence    

Annotation

kegg
ID rcu:RCOM_1685320
description Lignin-forming anionic peroxidase precursor, putative (EC:1.11.1.7)
nr
ID XP_002509737.1
description Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
swissprot
ID Q02200
description Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1
trembl
ID B9RC53
description Peroxidase OS=Ricinus communis GN=RCOM_1685320 PE=3 SV=1
Gene Ontology
ID GO:0004601
description lignin-forming anionic peroxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000720_010 0.0 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
2 Hb_011161_060 0.0277878278 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
3 Hb_001213_010 0.0299737661 - - PREDICTED: laccase-7 [Jatropha curcas]
4 Hb_000671_010 0.0309733693 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
5 Hb_054102_010 0.0357581379 - - abhydrolase domain containing, putative [Ricinus communis]
6 Hb_002757_050 0.0425651177 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
7 Hb_148383_010 0.04853722 - - PREDICTED: protein YLS9 [Jatropha curcas]
8 Hb_000205_290 0.0584295229 - - -
9 Hb_000576_080 0.0601111931 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006153_190 0.0797292032 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
11 Hb_000948_040 0.0860565735 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
12 Hb_126535_010 0.0863959809 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
13 Hb_005066_010 0.0974147317 - - FAD-binding domain-containing family protein [Populus trichocarpa]
14 Hb_033865_020 0.1012101542 - - -
15 Hb_175167_020 0.1056789084 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009545_040 0.107879566 - - conserved hypothetical protein [Ricinus communis]
17 Hb_124247_030 0.1081214421 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
18 Hb_004834_020 0.1226256656 - - major allergen Pru ar 1-like [Jatropha curcas]
19 Hb_025490_030 0.124083495 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
20 Hb_177880_010 0.1244513677 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]

Gene co-expression network

sample Hb_000720_010 Hb_000720_010 Hb_011161_060 Hb_011161_060 Hb_000720_010--Hb_011161_060 Hb_001213_010 Hb_001213_010 Hb_000720_010--Hb_001213_010 Hb_000671_010 Hb_000671_010 Hb_000720_010--Hb_000671_010 Hb_054102_010 Hb_054102_010 Hb_000720_010--Hb_054102_010 Hb_002757_050 Hb_002757_050 Hb_000720_010--Hb_002757_050 Hb_148383_010 Hb_148383_010 Hb_000720_010--Hb_148383_010 Hb_011161_060--Hb_000671_010 Hb_011161_060--Hb_002757_050 Hb_000205_290 Hb_000205_290 Hb_011161_060--Hb_000205_290 Hb_011161_060--Hb_001213_010 Hb_000948_040 Hb_000948_040 Hb_011161_060--Hb_000948_040 Hb_001213_010--Hb_054102_010 Hb_001213_010--Hb_148383_010 Hb_000576_080 Hb_000576_080 Hb_001213_010--Hb_000576_080 Hb_001213_010--Hb_000671_010 Hb_000671_010--Hb_002757_050 Hb_000671_010--Hb_000205_290 Hb_000671_010--Hb_000948_040 Hb_054102_010--Hb_148383_010 Hb_054102_010--Hb_000576_080 Hb_054102_010--Hb_011161_060 Hb_054102_010--Hb_000671_010 Hb_002757_050--Hb_000205_290 Hb_002757_050--Hb_000948_040 Hb_005066_010 Hb_005066_010 Hb_002757_050--Hb_005066_010 Hb_148383_010--Hb_000576_080 Hb_148383_010--Hb_011161_060 Hb_000115_180 Hb_000115_180 Hb_148383_010--Hb_000115_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0133071 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0938229 0

CAGE analysis