Hb_000115_180

Information

Type -
Description -
Location Contig115: 171598-172182
Sequence    

Annotation

kegg
ID rcu:RCOM_1308310
description hypothetical protein
nr
ID XP_002526983.1
description hypothetical protein RCOM_1308310 [Ricinus communis]
swissprot
ID Q9CA36
description VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=VQ8 PE=2 SV=1
trembl
ID B9SLW4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1308310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_180 0.0 - - hypothetical protein RCOM_1308310 [Ricinus communis]
2 Hb_001863_050 0.0034238798 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
3 Hb_006142_010 0.0097141972 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
4 Hb_002231_140 0.0313335937 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
5 Hb_000028_540 0.0334664579 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
6 Hb_156683_010 0.0354357856 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
7 Hb_012355_010 0.0530629111 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
8 Hb_000576_080 0.0656735193 - - conserved hypothetical protein [Ricinus communis]
9 Hb_176232_040 0.0663550481 - - conserved hypothetical protein [Ricinus communis]
10 Hb_148383_010 0.0772352483 - - PREDICTED: protein YLS9 [Jatropha curcas]
11 Hb_003407_020 0.0827875646 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
12 Hb_001862_020 0.0871614318 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
13 Hb_054102_010 0.0899653689 - - abhydrolase domain containing, putative [Ricinus communis]
14 Hb_001213_010 0.0957146758 - - PREDICTED: laccase-7 [Jatropha curcas]
15 Hb_146361_020 0.1001599031 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
16 Hb_186115_010 0.1017719887 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_001901_040 0.1061576085 - - hypothetical protein CARUB_v10027638mg [Capsella rubella]
18 Hb_002903_030 0.1122679196 - - polyphenol oxidase [Cydonia oblonga]
19 Hb_000513_100 0.1232415459 - - germin-like protein GLP, partial [Manihot esculenta]
20 Hb_000720_010 0.1253663322 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000115_180 Hb_000115_180 Hb_001863_050 Hb_001863_050 Hb_000115_180--Hb_001863_050 Hb_006142_010 Hb_006142_010 Hb_000115_180--Hb_006142_010 Hb_002231_140 Hb_002231_140 Hb_000115_180--Hb_002231_140 Hb_000028_540 Hb_000028_540 Hb_000115_180--Hb_000028_540 Hb_156683_010 Hb_156683_010 Hb_000115_180--Hb_156683_010 Hb_012355_010 Hb_012355_010 Hb_000115_180--Hb_012355_010 Hb_001863_050--Hb_006142_010 Hb_001863_050--Hb_002231_140 Hb_001863_050--Hb_000028_540 Hb_001863_050--Hb_156683_010 Hb_001863_050--Hb_012355_010 Hb_006142_010--Hb_002231_140 Hb_006142_010--Hb_000028_540 Hb_006142_010--Hb_156683_010 Hb_006142_010--Hb_012355_010 Hb_002231_140--Hb_000028_540 Hb_002231_140--Hb_156683_010 Hb_002231_140--Hb_012355_010 Hb_000028_540--Hb_156683_010 Hb_000028_540--Hb_012355_010 Hb_176232_040 Hb_176232_040 Hb_000028_540--Hb_176232_040 Hb_156683_010--Hb_012355_010 Hb_156683_010--Hb_176232_040 Hb_012355_010--Hb_176232_040 Hb_003407_020 Hb_003407_020 Hb_012355_010--Hb_003407_020 Hb_001862_020 Hb_001862_020 Hb_012355_010--Hb_001862_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.17875 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.575489 0

CAGE analysis