Hb_003407_020

Information

Type -
Description -
Location Contig3407: 2996-16558
Sequence    

Annotation

kegg
ID tcc:TCM_042545
description LRR receptor-like serine/threonine-protein kinase, putative
nr
ID KDP44808.1
description hypothetical protein JCGZ_01308 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A5C1G0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030954 PE=4 SV=1
Gene Ontology
ID GO:0016301
description receptor-like protein kinase at3g47110

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35627: 12556-12860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003407_020 0.0 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
2 Hb_001862_020 0.0043892249 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
3 Hb_176232_040 0.0164775449 - - conserved hypothetical protein [Ricinus communis]
4 Hb_146361_020 0.0174413825 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
5 Hb_186115_010 0.0190609475 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_002903_030 0.0296098848 - - polyphenol oxidase [Cydonia oblonga]
7 Hb_012355_010 0.0297908555 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
8 Hb_156683_010 0.0474237729 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
9 Hb_000028_540 0.0493921039 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
10 Hb_002231_140 0.0515235056 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
11 Hb_003938_220 0.0564203681 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
12 Hb_005656_110 0.0706938006 - - cytochrome P450, putative [Ricinus communis]
13 Hb_006142_010 0.0731048462 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
14 Hb_001863_050 0.0793758345 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
15 Hb_000248_090 0.0806522504 - - PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
16 Hb_000115_180 0.0827875646 - - hypothetical protein RCOM_1308310 [Ricinus communis]
17 Hb_004607_010 0.1098471465 - - -
18 Hb_001357_370 0.1394904886 - - -
19 Hb_113803_010 0.1453962512 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_004968_110 0.1456394597 - - hypothetical protein JCGZ_01361 [Jatropha curcas]

Gene co-expression network

sample Hb_003407_020 Hb_003407_020 Hb_001862_020 Hb_001862_020 Hb_003407_020--Hb_001862_020 Hb_176232_040 Hb_176232_040 Hb_003407_020--Hb_176232_040 Hb_146361_020 Hb_146361_020 Hb_003407_020--Hb_146361_020 Hb_186115_010 Hb_186115_010 Hb_003407_020--Hb_186115_010 Hb_002903_030 Hb_002903_030 Hb_003407_020--Hb_002903_030 Hb_012355_010 Hb_012355_010 Hb_003407_020--Hb_012355_010 Hb_001862_020--Hb_146361_020 Hb_001862_020--Hb_186115_010 Hb_001862_020--Hb_176232_040 Hb_001862_020--Hb_002903_030 Hb_001862_020--Hb_012355_010 Hb_176232_040--Hb_012355_010 Hb_156683_010 Hb_156683_010 Hb_176232_040--Hb_156683_010 Hb_000028_540 Hb_000028_540 Hb_176232_040--Hb_000028_540 Hb_176232_040--Hb_146361_020 Hb_146361_020--Hb_186115_010 Hb_146361_020--Hb_002903_030 Hb_003938_220 Hb_003938_220 Hb_146361_020--Hb_003938_220 Hb_186115_010--Hb_002903_030 Hb_186115_010--Hb_176232_040 Hb_186115_010--Hb_003938_220 Hb_002903_030--Hb_003938_220 Hb_005656_110 Hb_005656_110 Hb_002903_030--Hb_005656_110 Hb_012355_010--Hb_156683_010 Hb_012355_010--Hb_000028_540 Hb_002231_140 Hb_002231_140 Hb_012355_010--Hb_002231_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00227923 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00474547 0

CAGE analysis