Hb_176232_040

Information

Type -
Description -
Location Contig176232: 23853-26560
Sequence    

Annotation

kegg
ID rcu:RCOM_1077570
description hypothetical protein
nr
ID XP_002514806.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RM37
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1077570 PE=4 SV=1
Gene Ontology
ID GO:0043531
description tmv resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_176232_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012355_010 0.0133163637 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
3 Hb_003407_020 0.0164775449 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
4 Hb_001862_020 0.0208660911 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
5 Hb_156683_010 0.0309577598 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
6 Hb_000028_540 0.0329273631 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
7 Hb_146361_020 0.0339146041 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
8 Hb_002231_140 0.0350602183 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
9 Hb_186115_010 0.0355335505 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_002903_030 0.0460775826 - - polyphenol oxidase [Cydonia oblonga]
11 Hb_006142_010 0.0566608525 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
12 Hb_001863_050 0.0629390677 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
13 Hb_000115_180 0.0663550481 - - hypothetical protein RCOM_1308310 [Ricinus communis]
14 Hb_003938_220 0.0728690211 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
15 Hb_005656_110 0.0871286445 - - cytochrome P450, putative [Ricinus communis]
16 Hb_000248_090 0.0970760159 - - PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
17 Hb_004607_010 0.1262318744 - - -
18 Hb_000576_080 0.131678282 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001901_040 0.1407668226 - - hypothetical protein CARUB_v10027638mg [Capsella rubella]
20 Hb_148383_010 0.1431346272 - - PREDICTED: protein YLS9 [Jatropha curcas]

Gene co-expression network

sample Hb_176232_040 Hb_176232_040 Hb_012355_010 Hb_012355_010 Hb_176232_040--Hb_012355_010 Hb_003407_020 Hb_003407_020 Hb_176232_040--Hb_003407_020 Hb_001862_020 Hb_001862_020 Hb_176232_040--Hb_001862_020 Hb_156683_010 Hb_156683_010 Hb_176232_040--Hb_156683_010 Hb_000028_540 Hb_000028_540 Hb_176232_040--Hb_000028_540 Hb_146361_020 Hb_146361_020 Hb_176232_040--Hb_146361_020 Hb_012355_010--Hb_156683_010 Hb_012355_010--Hb_000028_540 Hb_002231_140 Hb_002231_140 Hb_012355_010--Hb_002231_140 Hb_012355_010--Hb_003407_020 Hb_012355_010--Hb_001862_020 Hb_003407_020--Hb_001862_020 Hb_003407_020--Hb_146361_020 Hb_186115_010 Hb_186115_010 Hb_003407_020--Hb_186115_010 Hb_002903_030 Hb_002903_030 Hb_003407_020--Hb_002903_030 Hb_001862_020--Hb_146361_020 Hb_001862_020--Hb_186115_010 Hb_001862_020--Hb_002903_030 Hb_156683_010--Hb_000028_540 Hb_156683_010--Hb_002231_140 Hb_006142_010 Hb_006142_010 Hb_156683_010--Hb_006142_010 Hb_001863_050 Hb_001863_050 Hb_156683_010--Hb_001863_050 Hb_000028_540--Hb_002231_140 Hb_000028_540--Hb_006142_010 Hb_000028_540--Hb_001863_050 Hb_146361_020--Hb_186115_010 Hb_146361_020--Hb_002903_030 Hb_003938_220 Hb_003938_220 Hb_146361_020--Hb_003938_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.164632 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.372627 0

CAGE analysis