Hb_002903_030

Information

Type -
Description -
Location Contig2903: 70984-71525
Sequence    

Annotation

kegg
ID mdm:103446446
description PPO; polyphenol oxidase
nr
ID ABY84850.1
description polyphenol oxidase [Cydonia oblonga]
swissprot
ID P43309
description Polyphenol oxidase, chloroplastic OS=Malus domestica PE=2 SV=1
trembl
ID B0LLV3
description Polyphenol oxidase (Fragment) OS=Cydonia oblonga PE=4 SV=1
Gene Ontology
ID GO:0044424
description polyphenol oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002903_030 0.0 - - polyphenol oxidase [Cydonia oblonga]
2 Hb_186115_010 0.010551456 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_146361_020 0.0121711649 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
4 Hb_001862_020 0.025222066 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
5 Hb_003938_220 0.0268288069 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
6 Hb_003407_020 0.0296098848 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
7 Hb_005656_110 0.0411186769 - - cytochrome P450, putative [Ricinus communis]
8 Hb_176232_040 0.0460775826 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000248_090 0.0510912368 - - PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
10 Hb_012355_010 0.0593774804 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
11 Hb_156683_010 0.0769847423 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
12 Hb_000028_540 0.0789496314 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
13 Hb_004607_010 0.0803395545 - - -
14 Hb_002231_140 0.081077172 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
15 Hb_006142_010 0.1026113345 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
16 Hb_001863_050 0.10886576 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
17 Hb_001357_370 0.1100547902 - - -
18 Hb_000115_180 0.1122679196 - - hypothetical protein RCOM_1308310 [Ricinus communis]
19 Hb_004968_110 0.1162208289 - - hypothetical protein JCGZ_01361 [Jatropha curcas]
20 Hb_000023_040 0.1179489215 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_002903_030 Hb_002903_030 Hb_186115_010 Hb_186115_010 Hb_002903_030--Hb_186115_010 Hb_146361_020 Hb_146361_020 Hb_002903_030--Hb_146361_020 Hb_001862_020 Hb_001862_020 Hb_002903_030--Hb_001862_020 Hb_003938_220 Hb_003938_220 Hb_002903_030--Hb_003938_220 Hb_003407_020 Hb_003407_020 Hb_002903_030--Hb_003407_020 Hb_005656_110 Hb_005656_110 Hb_002903_030--Hb_005656_110 Hb_186115_010--Hb_146361_020 Hb_186115_010--Hb_001862_020 Hb_186115_010--Hb_003407_020 Hb_176232_040 Hb_176232_040 Hb_186115_010--Hb_176232_040 Hb_186115_010--Hb_003938_220 Hb_146361_020--Hb_001862_020 Hb_146361_020--Hb_003407_020 Hb_146361_020--Hb_176232_040 Hb_146361_020--Hb_003938_220 Hb_001862_020--Hb_003407_020 Hb_001862_020--Hb_176232_040 Hb_012355_010 Hb_012355_010 Hb_001862_020--Hb_012355_010 Hb_003938_220--Hb_005656_110 Hb_000248_090 Hb_000248_090 Hb_003938_220--Hb_000248_090 Hb_003938_220--Hb_001862_020 Hb_003407_020--Hb_176232_040 Hb_003407_020--Hb_012355_010 Hb_005656_110--Hb_000248_090 Hb_004607_010 Hb_004607_010 Hb_005656_110--Hb_004607_010 Hb_005656_110--Hb_186115_010 Hb_005656_110--Hb_146361_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.231919 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.416792 0

CAGE analysis