Hb_003938_220

Information

Type transcription factor
Description TF Family: LOB
Location Contig3938: 195572-196476
Sequence    

Annotation

kegg
ID rcu:RCOM_0245570
description LOB domain-containing protein, putative
nr
ID XP_002534416.1
description LOB domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9M2J7
description LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1
trembl
ID B9T847
description LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0245570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003938_220 0.0 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
2 Hb_005656_110 0.014295966 - - cytochrome P450, putative [Ricinus communis]
3 Hb_000248_090 0.0242752016 - - PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
4 Hb_002903_030 0.0268288069 - - polyphenol oxidase [Cydonia oblonga]
5 Hb_186115_010 0.0373760067 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_146361_020 0.0389948428 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
7 Hb_001862_020 0.0520365319 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
8 Hb_004607_010 0.0535542079 - - -
9 Hb_003407_020 0.0564203681 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
10 Hb_176232_040 0.0728690211 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001357_370 0.0833169922 - - -
12 Hb_012355_010 0.0861486589 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
13 Hb_004968_110 0.0894949074 - - hypothetical protein JCGZ_01361 [Jatropha curcas]
14 Hb_000023_040 0.0912264509 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_007227_010 0.1007322999 - - hypothetical protein BN927_00890 [Lactococcus lactis subsp. lactis Dephy 1]
16 Hb_156683_010 0.1037220765 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
17 Hb_005714_080 0.1050940623 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
18 Hb_000028_540 0.1056826758 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
19 Hb_052135_010 0.1068634122 - - PREDICTED: phytochrome B isoform X2 [Jatropha curcas]
20 Hb_170365_010 0.1069629457 - - Retrotransposon protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_003938_220 Hb_003938_220 Hb_005656_110 Hb_005656_110 Hb_003938_220--Hb_005656_110 Hb_000248_090 Hb_000248_090 Hb_003938_220--Hb_000248_090 Hb_002903_030 Hb_002903_030 Hb_003938_220--Hb_002903_030 Hb_186115_010 Hb_186115_010 Hb_003938_220--Hb_186115_010 Hb_146361_020 Hb_146361_020 Hb_003938_220--Hb_146361_020 Hb_001862_020 Hb_001862_020 Hb_003938_220--Hb_001862_020 Hb_005656_110--Hb_000248_090 Hb_004607_010 Hb_004607_010 Hb_005656_110--Hb_004607_010 Hb_005656_110--Hb_002903_030 Hb_005656_110--Hb_186115_010 Hb_005656_110--Hb_146361_020 Hb_000248_090--Hb_004607_010 Hb_000248_090--Hb_002903_030 Hb_001357_370 Hb_001357_370 Hb_000248_090--Hb_001357_370 Hb_000248_090--Hb_186115_010 Hb_002903_030--Hb_186115_010 Hb_002903_030--Hb_146361_020 Hb_002903_030--Hb_001862_020 Hb_003407_020 Hb_003407_020 Hb_002903_030--Hb_003407_020 Hb_186115_010--Hb_146361_020 Hb_186115_010--Hb_001862_020 Hb_186115_010--Hb_003407_020 Hb_176232_040 Hb_176232_040 Hb_186115_010--Hb_176232_040 Hb_146361_020--Hb_001862_020 Hb_146361_020--Hb_003407_020 Hb_146361_020--Hb_176232_040 Hb_001862_020--Hb_003407_020 Hb_001862_020--Hb_176232_040 Hb_012355_010 Hb_012355_010 Hb_001862_020--Hb_012355_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0273331 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0431034 0

CAGE analysis