Hb_146361_020

Information

Type -
Description -
Location Contig146361: 5909-6262
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14240g
description POPTRDRAFT_1086370; germin-like protein 1
nr
ID XP_012081089.1
description PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
swissprot
ID Q6K5Q0
description Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1
trembl
ID A0A067LA92
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09551 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11894: 5564-6536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_146361_020 0.0 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
2 Hb_186115_010 0.0016197955 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_002903_030 0.0121711649 - - polyphenol oxidase [Cydonia oblonga]
4 Hb_001862_020 0.0130525914 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
5 Hb_003407_020 0.0174413825 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
6 Hb_176232_040 0.0339146041 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003938_220 0.0389948428 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
8 Hb_012355_010 0.0472212003 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
9 Hb_005656_110 0.0532792259 - - cytochrome P450, putative [Ricinus communis]
10 Hb_000248_090 0.063246866 - - PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
11 Hb_156683_010 0.0648405613 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
12 Hb_000028_540 0.0668070371 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
13 Hb_002231_140 0.0689363506 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
14 Hb_006142_010 0.0904917614 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
15 Hb_004607_010 0.0924757713 - - -
16 Hb_001863_050 0.0967535241 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
17 Hb_000115_180 0.1001599031 - - hypothetical protein RCOM_1308310 [Ricinus communis]
18 Hb_001357_370 0.122163975 - - -
19 Hb_004968_110 0.1283235109 - - hypothetical protein JCGZ_01361 [Jatropha curcas]
20 Hb_000023_040 0.1300497268 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_146361_020 Hb_146361_020 Hb_186115_010 Hb_186115_010 Hb_146361_020--Hb_186115_010 Hb_002903_030 Hb_002903_030 Hb_146361_020--Hb_002903_030 Hb_001862_020 Hb_001862_020 Hb_146361_020--Hb_001862_020 Hb_003407_020 Hb_003407_020 Hb_146361_020--Hb_003407_020 Hb_176232_040 Hb_176232_040 Hb_146361_020--Hb_176232_040 Hb_003938_220 Hb_003938_220 Hb_146361_020--Hb_003938_220 Hb_186115_010--Hb_002903_030 Hb_186115_010--Hb_001862_020 Hb_186115_010--Hb_003407_020 Hb_186115_010--Hb_176232_040 Hb_186115_010--Hb_003938_220 Hb_002903_030--Hb_001862_020 Hb_002903_030--Hb_003938_220 Hb_002903_030--Hb_003407_020 Hb_005656_110 Hb_005656_110 Hb_002903_030--Hb_005656_110 Hb_001862_020--Hb_003407_020 Hb_001862_020--Hb_176232_040 Hb_012355_010 Hb_012355_010 Hb_001862_020--Hb_012355_010 Hb_003407_020--Hb_176232_040 Hb_003407_020--Hb_012355_010 Hb_176232_040--Hb_012355_010 Hb_156683_010 Hb_156683_010 Hb_176232_040--Hb_156683_010 Hb_000028_540 Hb_000028_540 Hb_176232_040--Hb_000028_540 Hb_003938_220--Hb_005656_110 Hb_000248_090 Hb_000248_090 Hb_003938_220--Hb_000248_090 Hb_003938_220--Hb_001862_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 8.25067 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 15.7456 0

CAGE analysis