Hb_005656_110

Information

Type -
Description -
Location Contig5656: 78206-79977
Sequence    

Annotation

kegg
ID rcu:RCOM_0205130
description cytochrome P450, putative (EC:1.14.13.77)
nr
ID XP_002527982.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID I7C6E8
description Beta-amyrin 28-oxidase OS=Panax ginseng PE=2 SV=1
trembl
ID B9SPR3
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_0205130 PE=3 SV=1
Gene Ontology
ID GO:0005506
description beta-amyrin 28-oxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005656_110 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_000248_090 0.0099805302 - - PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
3 Hb_003938_220 0.014295966 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
4 Hb_004607_010 0.0392692948 - - -
5 Hb_002903_030 0.0411186769 - - polyphenol oxidase [Cydonia oblonga]
6 Hb_186115_010 0.0516612207 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_146361_020 0.0532792259 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
8 Hb_001862_020 0.0663130692 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
9 Hb_001357_370 0.0690508204 - - -
10 Hb_003407_020 0.0706938006 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
11 Hb_004968_110 0.0752337131 - - hypothetical protein JCGZ_01361 [Jatropha curcas]
12 Hb_000023_040 0.076966718 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_007227_010 0.0864811053 - - hypothetical protein BN927_00890 [Lactococcus lactis subsp. lactis Dephy 1]
14 Hb_176232_040 0.0871286445 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005714_080 0.0908470763 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
16 Hb_052135_010 0.0926181854 - - PREDICTED: phytochrome B isoform X2 [Jatropha curcas]
17 Hb_170365_010 0.0927178187 - - Retrotransposon protein, putative [Theobroma cacao]
18 Hb_183433_020 0.0933173272 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
19 Hb_181803_010 0.0945213036 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
20 Hb_004000_030 0.0945948804 - - putative retrotransposon protein [Phyllostachys edulis]

Gene co-expression network

sample Hb_005656_110 Hb_005656_110 Hb_000248_090 Hb_000248_090 Hb_005656_110--Hb_000248_090 Hb_003938_220 Hb_003938_220 Hb_005656_110--Hb_003938_220 Hb_004607_010 Hb_004607_010 Hb_005656_110--Hb_004607_010 Hb_002903_030 Hb_002903_030 Hb_005656_110--Hb_002903_030 Hb_186115_010 Hb_186115_010 Hb_005656_110--Hb_186115_010 Hb_146361_020 Hb_146361_020 Hb_005656_110--Hb_146361_020 Hb_000248_090--Hb_003938_220 Hb_000248_090--Hb_004607_010 Hb_000248_090--Hb_002903_030 Hb_001357_370 Hb_001357_370 Hb_000248_090--Hb_001357_370 Hb_000248_090--Hb_186115_010 Hb_003938_220--Hb_002903_030 Hb_003938_220--Hb_186115_010 Hb_003938_220--Hb_146361_020 Hb_001862_020 Hb_001862_020 Hb_003938_220--Hb_001862_020 Hb_004607_010--Hb_001357_370 Hb_004968_110 Hb_004968_110 Hb_004607_010--Hb_004968_110 Hb_000023_040 Hb_000023_040 Hb_004607_010--Hb_000023_040 Hb_007227_010 Hb_007227_010 Hb_004607_010--Hb_007227_010 Hb_002903_030--Hb_186115_010 Hb_002903_030--Hb_146361_020 Hb_002903_030--Hb_001862_020 Hb_003407_020 Hb_003407_020 Hb_002903_030--Hb_003407_020 Hb_186115_010--Hb_146361_020 Hb_186115_010--Hb_001862_020 Hb_186115_010--Hb_003407_020 Hb_176232_040 Hb_176232_040 Hb_186115_010--Hb_176232_040 Hb_146361_020--Hb_001862_020 Hb_146361_020--Hb_003407_020 Hb_146361_020--Hb_176232_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0763019 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.112322 0

CAGE analysis