Hb_000023_040

Information

Type -
Description -
Location Contig23: 87485-91213
Sequence    

Annotation

kegg
ID tcc:TCM_044877
description DNA/RNA polymerases superfamily protein, putative
nr
ID XP_007032400.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061FQY7
description DNA/RNA polymerases superfamily protein, putative OS=Theobroma cacao GN=TCM_044877 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_040 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_004968_110 0.001736527 - - hypothetical protein JCGZ_01361 [Jatropha curcas]
3 Hb_001357_370 0.0079306824 - - -
4 Hb_007227_010 0.0095365686 - - hypothetical protein BN927_00890 [Lactococcus lactis subsp. lactis Dephy 1]
5 Hb_005714_080 0.0139143271 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
6 Hb_052135_010 0.0156905064 - - PREDICTED: phytochrome B isoform X2 [Jatropha curcas]
7 Hb_170365_010 0.0157904298 - - Retrotransposon protein, putative [Theobroma cacao]
8 Hb_183433_020 0.0163916954 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
9 Hb_181803_010 0.017599258 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
10 Hb_004000_030 0.0176730565 - - putative retrotransposon protein [Phyllostachys edulis]
11 Hb_185830_040 0.0188389777 - - hypothetical protein JCGZ_16423 [Jatropha curcas]
12 Hb_002793_010 0.0192856979 - - putative metal-nicotianamine transporter YSL7 -like protein [Gossypium arboreum]
13 Hb_000856_220 0.0197056596 - - hypothetical protein POPTR_0012s07300g [Populus trichocarpa]
14 Hb_007289_010 0.0270060689 - - cytochrome P450, putative [Ricinus communis]
15 Hb_008021_020 0.0271582102 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
16 Hb_000283_170 0.027471819 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000319_100 0.0358570555 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
18 Hb_001587_130 0.0361910484 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
19 Hb_000156_020 0.0372585993 - - PREDICTED: la-related protein 6A [Jatropha curcas]
20 Hb_003176_030 0.0372585993 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]

Gene co-expression network

sample Hb_000023_040 Hb_000023_040 Hb_004968_110 Hb_004968_110 Hb_000023_040--Hb_004968_110 Hb_001357_370 Hb_001357_370 Hb_000023_040--Hb_001357_370 Hb_007227_010 Hb_007227_010 Hb_000023_040--Hb_007227_010 Hb_005714_080 Hb_005714_080 Hb_000023_040--Hb_005714_080 Hb_052135_010 Hb_052135_010 Hb_000023_040--Hb_052135_010 Hb_170365_010 Hb_170365_010 Hb_000023_040--Hb_170365_010 Hb_004968_110--Hb_001357_370 Hb_004968_110--Hb_007227_010 Hb_004968_110--Hb_005714_080 Hb_004968_110--Hb_052135_010 Hb_004968_110--Hb_170365_010 Hb_001357_370--Hb_007227_010 Hb_001357_370--Hb_005714_080 Hb_001357_370--Hb_052135_010 Hb_001357_370--Hb_170365_010 Hb_007227_010--Hb_005714_080 Hb_007227_010--Hb_052135_010 Hb_007227_010--Hb_170365_010 Hb_183433_020 Hb_183433_020 Hb_007227_010--Hb_183433_020 Hb_181803_010 Hb_181803_010 Hb_007227_010--Hb_181803_010 Hb_004000_030 Hb_004000_030 Hb_007227_010--Hb_004000_030 Hb_005714_080--Hb_052135_010 Hb_005714_080--Hb_170365_010 Hb_005714_080--Hb_183433_020 Hb_005714_080--Hb_181803_010 Hb_005714_080--Hb_004000_030 Hb_052135_010--Hb_170365_010 Hb_052135_010--Hb_183433_020 Hb_052135_010--Hb_181803_010 Hb_052135_010--Hb_004000_030 Hb_185830_040 Hb_185830_040 Hb_052135_010--Hb_185830_040 Hb_170365_010--Hb_183433_020 Hb_170365_010--Hb_181803_010 Hb_170365_010--Hb_004000_030 Hb_170365_010--Hb_185830_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00440585 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00450181 0

CAGE analysis