Hb_004607_010

Information

Type -
Description -
Location Contig4607: 9326-10426
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004607_010 0.0 - - -
2 Hb_000248_090 0.029292934 - - PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
3 Hb_001357_370 0.0298101891 - - -
4 Hb_004968_110 0.0360020595 - - hypothetical protein JCGZ_01361 [Jatropha curcas]
5 Hb_000023_040 0.0377377659 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_005656_110 0.0392692948 - - cytochrome P450, putative [Ricinus communis]
7 Hb_007227_010 0.0472684258 - - hypothetical protein BN927_00890 [Lactococcus lactis subsp. lactis Dephy 1]
8 Hb_005714_080 0.0516426782 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
9 Hb_052135_010 0.0534172925 - - PREDICTED: phytochrome B isoform X2 [Jatropha curcas]
10 Hb_170365_010 0.0535171255 - - Retrotransposon protein, putative [Theobroma cacao]
11 Hb_003938_220 0.0535542079 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
12 Hb_183433_020 0.0541178411 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
13 Hb_181803_010 0.0553242709 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
14 Hb_004000_030 0.0553979989 - - putative retrotransposon protein [Phyllostachys edulis]
15 Hb_185830_040 0.056562788 - - hypothetical protein JCGZ_16423 [Jatropha curcas]
16 Hb_002793_010 0.0570090651 - - putative metal-nicotianamine transporter YSL7 -like protein [Gossypium arboreum]
17 Hb_000856_220 0.0574286054 - - hypothetical protein POPTR_0012s07300g [Populus trichocarpa]
18 Hb_007289_010 0.0647209565 - - cytochrome P450, putative [Ricinus communis]
19 Hb_008021_020 0.0648729151 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
20 Hb_000283_170 0.0651861454 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004607_010 Hb_004607_010 Hb_000248_090 Hb_000248_090 Hb_004607_010--Hb_000248_090 Hb_001357_370 Hb_001357_370 Hb_004607_010--Hb_001357_370 Hb_004968_110 Hb_004968_110 Hb_004607_010--Hb_004968_110 Hb_000023_040 Hb_000023_040 Hb_004607_010--Hb_000023_040 Hb_005656_110 Hb_005656_110 Hb_004607_010--Hb_005656_110 Hb_007227_010 Hb_007227_010 Hb_004607_010--Hb_007227_010 Hb_000248_090--Hb_005656_110 Hb_003938_220 Hb_003938_220 Hb_000248_090--Hb_003938_220 Hb_002903_030 Hb_002903_030 Hb_000248_090--Hb_002903_030 Hb_000248_090--Hb_001357_370 Hb_186115_010 Hb_186115_010 Hb_000248_090--Hb_186115_010 Hb_001357_370--Hb_004968_110 Hb_001357_370--Hb_000023_040 Hb_001357_370--Hb_007227_010 Hb_005714_080 Hb_005714_080 Hb_001357_370--Hb_005714_080 Hb_052135_010 Hb_052135_010 Hb_001357_370--Hb_052135_010 Hb_170365_010 Hb_170365_010 Hb_001357_370--Hb_170365_010 Hb_004968_110--Hb_000023_040 Hb_004968_110--Hb_007227_010 Hb_004968_110--Hb_005714_080 Hb_004968_110--Hb_052135_010 Hb_004968_110--Hb_170365_010 Hb_000023_040--Hb_007227_010 Hb_000023_040--Hb_005714_080 Hb_000023_040--Hb_052135_010 Hb_000023_040--Hb_170365_010 Hb_005656_110--Hb_003938_220 Hb_005656_110--Hb_002903_030 Hb_005656_110--Hb_186115_010 Hb_146361_020 Hb_146361_020 Hb_005656_110--Hb_146361_020 Hb_007227_010--Hb_005714_080 Hb_007227_010--Hb_052135_010 Hb_007227_010--Hb_170365_010 Hb_183433_020 Hb_183433_020 Hb_007227_010--Hb_183433_020 Hb_181803_010 Hb_181803_010 Hb_007227_010--Hb_181803_010 Hb_004000_030 Hb_004000_030 Hb_007227_010--Hb_004000_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0814546 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0994528 0

CAGE analysis