Hb_001862_020

Information

Type -
Description -
Location Contig1862: 25051-29528
Sequence    

Annotation

kegg
ID zma:103652604
description uncharacterized LOC103652604
nr
ID XP_008676375.1
description PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
swissprot
ID P20825
description Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A0A9CM28
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0003676
description low quality protein: transposon tf2-1 polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001862_020 0.0 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
2 Hb_003407_020 0.0043892249 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
3 Hb_146361_020 0.0130525914 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
4 Hb_186115_010 0.0146722547 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_176232_040 0.0208660911 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002903_030 0.025222066 - - polyphenol oxidase [Cydonia oblonga]
7 Hb_012355_010 0.0341780412 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
8 Hb_156683_010 0.0518079795 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
9 Hb_003938_220 0.0520365319 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
10 Hb_000028_540 0.0537758916 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
11 Hb_002231_140 0.0559068197 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
12 Hb_005656_110 0.0663130692 - - cytochrome P450, putative [Ricinus communis]
13 Hb_000248_090 0.0762740736 - - PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
14 Hb_006142_010 0.0774821535 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
15 Hb_001863_050 0.0837509683 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
16 Hb_000115_180 0.0871614318 - - hypothetical protein RCOM_1308310 [Ricinus communis]
17 Hb_004607_010 0.105478226 - - -
18 Hb_001357_370 0.1351335461 - - -
19 Hb_004968_110 0.1412853157 - - hypothetical protein JCGZ_01361 [Jatropha curcas]
20 Hb_000023_040 0.1430092979 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_001862_020 Hb_001862_020 Hb_003407_020 Hb_003407_020 Hb_001862_020--Hb_003407_020 Hb_146361_020 Hb_146361_020 Hb_001862_020--Hb_146361_020 Hb_186115_010 Hb_186115_010 Hb_001862_020--Hb_186115_010 Hb_176232_040 Hb_176232_040 Hb_001862_020--Hb_176232_040 Hb_002903_030 Hb_002903_030 Hb_001862_020--Hb_002903_030 Hb_012355_010 Hb_012355_010 Hb_001862_020--Hb_012355_010 Hb_003407_020--Hb_176232_040 Hb_003407_020--Hb_146361_020 Hb_003407_020--Hb_186115_010 Hb_003407_020--Hb_002903_030 Hb_003407_020--Hb_012355_010 Hb_146361_020--Hb_186115_010 Hb_146361_020--Hb_002903_030 Hb_146361_020--Hb_176232_040 Hb_003938_220 Hb_003938_220 Hb_146361_020--Hb_003938_220 Hb_186115_010--Hb_002903_030 Hb_186115_010--Hb_176232_040 Hb_186115_010--Hb_003938_220 Hb_176232_040--Hb_012355_010 Hb_156683_010 Hb_156683_010 Hb_176232_040--Hb_156683_010 Hb_000028_540 Hb_000028_540 Hb_176232_040--Hb_000028_540 Hb_002903_030--Hb_003938_220 Hb_005656_110 Hb_005656_110 Hb_002903_030--Hb_005656_110 Hb_012355_010--Hb_156683_010 Hb_012355_010--Hb_000028_540 Hb_002231_140 Hb_002231_140 Hb_012355_010--Hb_002231_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00479496 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00976577 0

CAGE analysis