Hb_002231_140

Information

Type -
Description -
Location Contig2231: 183544-186685
Sequence    

Annotation

kegg
ID tcc:TCM_043787
description hypothetical protein
nr
ID XP_012072702.1
description PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061FQA2
description Uncharacterized protein OS=Theobroma cacao GN=TCM_043787 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002231_140 0.0 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
2 Hb_000028_540 0.0021341093 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
3 Hb_156683_010 0.0041047207 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
4 Hb_006142_010 0.0216231845 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
5 Hb_012355_010 0.0217488974 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
6 Hb_001863_050 0.027911453 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
7 Hb_000115_180 0.0313335937 - - hypothetical protein RCOM_1308310 [Ricinus communis]
8 Hb_176232_040 0.0350602183 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003407_020 0.0515235056 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
10 Hb_001862_020 0.0559068197 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
11 Hb_146361_020 0.0689363506 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
12 Hb_186115_010 0.0705525922 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_002903_030 0.081077172 - - polyphenol oxidase [Cydonia oblonga]
14 Hb_000576_080 0.0968785751 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003938_220 0.1078054528 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
16 Hb_148383_010 0.1083965952 - - PREDICTED: protein YLS9 [Jatropha curcas]
17 Hb_001901_040 0.1192726255 - - hypothetical protein CARUB_v10027638mg [Capsella rubella]
18 Hb_054102_010 0.1210702755 - - abhydrolase domain containing, putative [Ricinus communis]
19 Hb_005656_110 0.1220238422 - - cytochrome P450, putative [Ricinus communis]
20 Hb_001213_010 0.126791106 - - PREDICTED: laccase-7 [Jatropha curcas]

Gene co-expression network

sample Hb_002231_140 Hb_002231_140 Hb_000028_540 Hb_000028_540 Hb_002231_140--Hb_000028_540 Hb_156683_010 Hb_156683_010 Hb_002231_140--Hb_156683_010 Hb_006142_010 Hb_006142_010 Hb_002231_140--Hb_006142_010 Hb_012355_010 Hb_012355_010 Hb_002231_140--Hb_012355_010 Hb_001863_050 Hb_001863_050 Hb_002231_140--Hb_001863_050 Hb_000115_180 Hb_000115_180 Hb_002231_140--Hb_000115_180 Hb_000028_540--Hb_156683_010 Hb_000028_540--Hb_012355_010 Hb_000028_540--Hb_006142_010 Hb_000028_540--Hb_001863_050 Hb_176232_040 Hb_176232_040 Hb_000028_540--Hb_176232_040 Hb_156683_010--Hb_012355_010 Hb_156683_010--Hb_006142_010 Hb_156683_010--Hb_176232_040 Hb_156683_010--Hb_001863_050 Hb_006142_010--Hb_001863_050 Hb_006142_010--Hb_000115_180 Hb_006142_010--Hb_012355_010 Hb_012355_010--Hb_176232_040 Hb_003407_020 Hb_003407_020 Hb_012355_010--Hb_003407_020 Hb_001862_020 Hb_001862_020 Hb_012355_010--Hb_001862_020 Hb_001863_050--Hb_000115_180 Hb_001863_050--Hb_012355_010 Hb_000115_180--Hb_000028_540 Hb_000115_180--Hb_156683_010 Hb_000115_180--Hb_012355_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0101227 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0274993 0

CAGE analysis