Hb_006142_010

Information

Type -
Description -
Location Contig6142: 6385-9126
Sequence    

Annotation

kegg
ID cic:CICLE_v10013815mg
description hypothetical protein
nr
ID XP_006428280.1
description hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
swissprot
ID Q42371
description LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1
trembl
ID A0A067DPG8
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042766mg PE=3 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006142_010 0.0 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
2 Hb_001863_050 0.0062904429 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
3 Hb_000115_180 0.0097141972 - - hypothetical protein RCOM_1308310 [Ricinus communis]
4 Hb_002231_140 0.0216231845 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
5 Hb_000028_540 0.0237566921 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
6 Hb_156683_010 0.0257266552 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
7 Hb_012355_010 0.0433611843 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
8 Hb_176232_040 0.0566608525 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003407_020 0.0731048462 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
10 Hb_000576_080 0.0753556201 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001862_020 0.0774821535 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
12 Hb_148383_010 0.0869050919 - - PREDICTED: protein YLS9 [Jatropha curcas]
13 Hb_146361_020 0.0904917614 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
14 Hb_186115_010 0.092105321 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
15 Hb_054102_010 0.0996190977 - - abhydrolase domain containing, putative [Ricinus communis]
16 Hb_002903_030 0.1026113345 - - polyphenol oxidase [Cydonia oblonga]
17 Hb_001213_010 0.1053601843 - - PREDICTED: laccase-7 [Jatropha curcas]
18 Hb_001901_040 0.1094492738 - - hypothetical protein CARUB_v10027638mg [Capsella rubella]
19 Hb_000513_100 0.1268169803 - - germin-like protein GLP, partial [Manihot esculenta]
20 Hb_003938_220 0.129284262 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006142_010 Hb_006142_010 Hb_001863_050 Hb_001863_050 Hb_006142_010--Hb_001863_050 Hb_000115_180 Hb_000115_180 Hb_006142_010--Hb_000115_180 Hb_002231_140 Hb_002231_140 Hb_006142_010--Hb_002231_140 Hb_000028_540 Hb_000028_540 Hb_006142_010--Hb_000028_540 Hb_156683_010 Hb_156683_010 Hb_006142_010--Hb_156683_010 Hb_012355_010 Hb_012355_010 Hb_006142_010--Hb_012355_010 Hb_001863_050--Hb_000115_180 Hb_001863_050--Hb_002231_140 Hb_001863_050--Hb_000028_540 Hb_001863_050--Hb_156683_010 Hb_001863_050--Hb_012355_010 Hb_000115_180--Hb_002231_140 Hb_000115_180--Hb_000028_540 Hb_000115_180--Hb_156683_010 Hb_000115_180--Hb_012355_010 Hb_002231_140--Hb_000028_540 Hb_002231_140--Hb_156683_010 Hb_002231_140--Hb_012355_010 Hb_000028_540--Hb_156683_010 Hb_000028_540--Hb_012355_010 Hb_176232_040 Hb_176232_040 Hb_000028_540--Hb_176232_040 Hb_156683_010--Hb_012355_010 Hb_156683_010--Hb_176232_040 Hb_012355_010--Hb_176232_040 Hb_003407_020 Hb_003407_020 Hb_012355_010--Hb_003407_020 Hb_001862_020 Hb_001862_020 Hb_012355_010--Hb_001862_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00490777 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0149787 0

CAGE analysis