Hb_000028_540

Information

Type -
Description -
Location Contig28: 568291-569123
Sequence    

Annotation

kegg
ID pop:POPTR_0012s03720g
description POPTRDRAFT_772268; hypothetical protein
nr
ID XP_002318321.1
description hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
swissprot
ID B9SXY8
description CASP-like protein 4D1 OS=Ricinus communis GN=RCOM_1206790 PE=3 SV=1
trembl
ID B9I4V9
description CASP-like protein OS=Populus trichocarpa GN=POPTR_0012s03720g PE=3 SV=1
Gene Ontology
ID GO:0016020
description casp-like protein 4d1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_540 0.0 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
2 Hb_156683_010 0.0019706205 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
3 Hb_002231_140 0.0021341093 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
4 Hb_012355_010 0.0196152596 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
5 Hb_006142_010 0.0237566921 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
6 Hb_001863_050 0.0300445714 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
7 Hb_176232_040 0.0329273631 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000115_180 0.0334664579 - - hypothetical protein RCOM_1308310 [Ricinus communis]
9 Hb_003407_020 0.0493921039 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
10 Hb_001862_020 0.0537758916 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
11 Hb_146361_020 0.0668070371 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
12 Hb_186115_010 0.0684235 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_002903_030 0.0789496314 - - polyphenol oxidase [Cydonia oblonga]
14 Hb_000576_080 0.0990001587 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003938_220 0.1056826758 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
16 Hb_148383_010 0.1105147841 - - PREDICTED: protein YLS9 [Jatropha curcas]
17 Hb_005656_110 0.1199040544 - - cytochrome P450, putative [Ricinus communis]
18 Hb_001901_040 0.1204054199 - - hypothetical protein CARUB_v10027638mg [Capsella rubella]
19 Hb_054102_010 0.1231841754 - - abhydrolase domain containing, putative [Ricinus communis]
20 Hb_001213_010 0.1289028712 - - PREDICTED: laccase-7 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_540 Hb_000028_540 Hb_156683_010 Hb_156683_010 Hb_000028_540--Hb_156683_010 Hb_002231_140 Hb_002231_140 Hb_000028_540--Hb_002231_140 Hb_012355_010 Hb_012355_010 Hb_000028_540--Hb_012355_010 Hb_006142_010 Hb_006142_010 Hb_000028_540--Hb_006142_010 Hb_001863_050 Hb_001863_050 Hb_000028_540--Hb_001863_050 Hb_176232_040 Hb_176232_040 Hb_000028_540--Hb_176232_040 Hb_156683_010--Hb_002231_140 Hb_156683_010--Hb_012355_010 Hb_156683_010--Hb_006142_010 Hb_156683_010--Hb_176232_040 Hb_156683_010--Hb_001863_050 Hb_002231_140--Hb_006142_010 Hb_002231_140--Hb_012355_010 Hb_002231_140--Hb_001863_050 Hb_000115_180 Hb_000115_180 Hb_002231_140--Hb_000115_180 Hb_012355_010--Hb_176232_040 Hb_003407_020 Hb_003407_020 Hb_012355_010--Hb_003407_020 Hb_001862_020 Hb_001862_020 Hb_012355_010--Hb_001862_020 Hb_006142_010--Hb_001863_050 Hb_006142_010--Hb_000115_180 Hb_006142_010--Hb_012355_010 Hb_001863_050--Hb_000115_180 Hb_001863_050--Hb_012355_010 Hb_176232_040--Hb_003407_020 Hb_176232_040--Hb_001862_020 Hb_146361_020 Hb_146361_020 Hb_176232_040--Hb_146361_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0508208 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.136506 0

CAGE analysis