Hb_000576_080

Information

Type -
Description -
Location Contig576: 168838-169170
Sequence    

Annotation

kegg
ID rcu:RCOM_0803390
description hypothetical protein
nr
ID XP_002516585.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RS66
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0803390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000576_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_148383_010 0.0116073244 - - PREDICTED: protein YLS9 [Jatropha curcas]
3 Hb_054102_010 0.0244060976 - - abhydrolase domain containing, putative [Ricinus communis]
4 Hb_001213_010 0.0301930964 - - PREDICTED: laccase-7 [Jatropha curcas]
5 Hb_000720_010 0.0601111931 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
6 Hb_000115_180 0.0656735193 - - hypothetical protein RCOM_1308310 [Ricinus communis]
7 Hb_001863_050 0.0690869201 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
8 Hb_006142_010 0.0753556201 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
9 Hb_011161_060 0.0877294707 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
10 Hb_000671_010 0.0908874133 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
11 Hb_002231_140 0.0968785751 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
12 Hb_000028_540 0.0990001587 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
13 Hb_006153_190 0.1001762183 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
14 Hb_156683_010 0.1009588012 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
15 Hb_002757_050 0.1023633501 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
16 Hb_175167_020 0.1025817579 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001901_040 0.1066269155 - - hypothetical protein CARUB_v10027638mg [Capsella rubella]
18 Hb_126535_010 0.1141220178 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
19 Hb_000205_290 0.1180277518 - - -
20 Hb_000513_100 0.1184011301 - - germin-like protein GLP, partial [Manihot esculenta]

Gene co-expression network

sample Hb_000576_080 Hb_000576_080 Hb_148383_010 Hb_148383_010 Hb_000576_080--Hb_148383_010 Hb_054102_010 Hb_054102_010 Hb_000576_080--Hb_054102_010 Hb_001213_010 Hb_001213_010 Hb_000576_080--Hb_001213_010 Hb_000720_010 Hb_000720_010 Hb_000576_080--Hb_000720_010 Hb_000115_180 Hb_000115_180 Hb_000576_080--Hb_000115_180 Hb_001863_050 Hb_001863_050 Hb_000576_080--Hb_001863_050 Hb_148383_010--Hb_054102_010 Hb_148383_010--Hb_001213_010 Hb_148383_010--Hb_000720_010 Hb_011161_060 Hb_011161_060 Hb_148383_010--Hb_011161_060 Hb_148383_010--Hb_000115_180 Hb_054102_010--Hb_001213_010 Hb_054102_010--Hb_000720_010 Hb_054102_010--Hb_011161_060 Hb_000671_010 Hb_000671_010 Hb_054102_010--Hb_000671_010 Hb_001213_010--Hb_000720_010 Hb_001213_010--Hb_011161_060 Hb_001213_010--Hb_000671_010 Hb_000720_010--Hb_011161_060 Hb_000720_010--Hb_000671_010 Hb_002757_050 Hb_002757_050 Hb_000720_010--Hb_002757_050 Hb_000115_180--Hb_001863_050 Hb_006142_010 Hb_006142_010 Hb_000115_180--Hb_006142_010 Hb_002231_140 Hb_002231_140 Hb_000115_180--Hb_002231_140 Hb_000028_540 Hb_000028_540 Hb_000115_180--Hb_000028_540 Hb_156683_010 Hb_156683_010 Hb_000115_180--Hb_156683_010 Hb_012355_010 Hb_012355_010 Hb_000115_180--Hb_012355_010 Hb_001863_050--Hb_006142_010 Hb_001863_050--Hb_002231_140 Hb_001863_050--Hb_000028_540 Hb_001863_050--Hb_156683_010 Hb_001863_050--Hb_012355_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.02956 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.8681 0

CAGE analysis