Hb_090894_010

Information

Type -
Description -
Location Contig90894: 226-695
Sequence    

Annotation

kegg
ID sly:101268579
description uncharacterized LOC101268579
nr
ID XP_012091193.1
description PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03356 PE=4 SV=1
Gene Ontology
ID GO:0016021
description hypoxia-responsive family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_090894_010 0.0 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
2 Hb_073973_050 0.0249641552 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
3 Hb_007845_020 0.039350332 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
4 Hb_000315_110 0.0411836909 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
5 Hb_001948_020 0.0419422211 - - -
6 Hb_036291_010 0.0476544203 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
7 Hb_001546_090 0.0582764449 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
8 Hb_000008_010 0.0590499297 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
9 Hb_001266_110 0.0637227209 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003334_020 0.064789309 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]
11 Hb_004057_050 0.0721919244 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
12 Hb_001414_080 0.0778111416 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
13 Hb_000086_710 0.079513636 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
14 Hb_001266_090 0.0808752978 - - -
15 Hb_109163_010 0.085714272 - - polyphenol oxidase [Hevea brasiliensis]
16 Hb_080238_010 0.0859943727 - - Reticuline oxidase precursor, putative [Ricinus communis]
17 Hb_000699_060 0.086311354 - - hypothetical protein POPTR_0019s03180g [Populus trichocarpa]
18 Hb_033865_020 0.0869197761 - - -
19 Hb_006925_010 0.0903533081 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
20 Hb_005066_010 0.0905338475 - - FAD-binding domain-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_090894_010 Hb_090894_010 Hb_073973_050 Hb_073973_050 Hb_090894_010--Hb_073973_050 Hb_007845_020 Hb_007845_020 Hb_090894_010--Hb_007845_020 Hb_000315_110 Hb_000315_110 Hb_090894_010--Hb_000315_110 Hb_001948_020 Hb_001948_020 Hb_090894_010--Hb_001948_020 Hb_036291_010 Hb_036291_010 Hb_090894_010--Hb_036291_010 Hb_001546_090 Hb_001546_090 Hb_090894_010--Hb_001546_090 Hb_073973_050--Hb_007845_020 Hb_073973_050--Hb_000315_110 Hb_073973_050--Hb_001948_020 Hb_073973_050--Hb_036291_010 Hb_000008_010 Hb_000008_010 Hb_073973_050--Hb_000008_010 Hb_007845_020--Hb_000315_110 Hb_007845_020--Hb_001948_020 Hb_007845_020--Hb_036291_010 Hb_007845_020--Hb_000008_010 Hb_000315_110--Hb_000008_010 Hb_001414_080 Hb_001414_080 Hb_000315_110--Hb_001414_080 Hb_001266_090 Hb_001266_090 Hb_000315_110--Hb_001266_090 Hb_001948_020--Hb_001546_090 Hb_001948_020--Hb_036291_010 Hb_033865_020 Hb_033865_020 Hb_001948_020--Hb_033865_020 Hb_036291_010--Hb_001546_090 Hb_001266_110 Hb_001266_110 Hb_036291_010--Hb_001266_110 Hb_001546_090--Hb_033865_020 Hb_005066_010 Hb_005066_010 Hb_001546_090--Hb_005066_010 Hb_000948_040 Hb_000948_040 Hb_001546_090--Hb_000948_040 Hb_001546_090--Hb_073973_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175987 0 0 2.8009 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 138.839 0

CAGE analysis