Hb_001414_080

Information

Type -
Description -
Location Contig1414: 65879-67122
Sequence    

Annotation

kegg
ID egr:104453648
description probable S-adenosylmethionine-dependent methyltransferase At5g37990
nr
ID XP_012072330.1
description PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
swissprot
ID Q9LS10
description Probable S-adenosylmethionine-dependent methyltransferase At5g38100 OS=Arabidopsis thaliana GN=At5g38100 PE=2 SV=1
trembl
ID A0A067KT36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04776 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable s-adenosylmethionine-dependent methyltransferase at5g37990

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11164: 66093-67177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001414_080 0.0 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
2 Hb_000008_010 0.0219918627 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
3 Hb_001266_090 0.0272337963 - - -
4 Hb_000008_130 0.0361119033 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
5 Hb_000013_040 0.0361119033 - - -
6 Hb_000013_070 0.0361119033 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_000014_180 0.0361119033 - - PREDICTED: endo-1,4-beta-xylanase D-like [Fragaria vesca subsp. vesca]
8 Hb_000021_080 0.0361119033 - - -
9 Hb_000031_270 0.0361119033 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
10 Hb_000035_070 0.0361119033 - - PREDICTED: uncharacterized protein LOC104814513 [Tarenaya hassleriana]
11 Hb_000041_140 0.0361119033 - - -
12 Hb_000043_130 0.0361119033 - - -
13 Hb_000045_240 0.0361119033 - - -
14 Hb_000056_270 0.0361119033 - - Origin recognition complex subunit, putative [Ricinus communis]
15 Hb_000057_150 0.0361119033 - - hypothetical protein EUTSA_v10009202mg [Eutrema salsugineum]
16 Hb_000059_250 0.0361119033 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
17 Hb_000062_160 0.0361119033 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
18 Hb_000068_050 0.0361119033 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
19 Hb_000073_060 0.0361119033 - - hypothetical protein L484_026849 [Morus notabilis]
20 Hb_000078_150 0.0361119033 - - -

Gene co-expression network

sample Hb_001414_080 Hb_001414_080 Hb_000008_010 Hb_000008_010 Hb_001414_080--Hb_000008_010 Hb_001266_090 Hb_001266_090 Hb_001414_080--Hb_001266_090 Hb_000008_130 Hb_000008_130 Hb_001414_080--Hb_000008_130 Hb_000013_040 Hb_000013_040 Hb_001414_080--Hb_000013_040 Hb_000013_070 Hb_000013_070 Hb_001414_080--Hb_000013_070 Hb_000014_180 Hb_000014_180 Hb_001414_080--Hb_000014_180 Hb_000315_110 Hb_000315_110 Hb_000008_010--Hb_000315_110 Hb_000008_010--Hb_001266_090 Hb_073973_050 Hb_073973_050 Hb_000008_010--Hb_073973_050 Hb_000008_010--Hb_000008_130 Hb_000008_010--Hb_000013_040 Hb_080238_010 Hb_080238_010 Hb_001266_090--Hb_080238_010 Hb_002929_010 Hb_002929_010 Hb_001266_090--Hb_002929_010 Hb_001266_090--Hb_000008_130 Hb_001266_090--Hb_000013_040 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000021_080 Hb_000021_080 Hb_000008_130--Hb_000021_080 Hb_000031_270 Hb_000031_270 Hb_000008_130--Hb_000031_270 Hb_000035_070 Hb_000035_070 Hb_000008_130--Hb_000035_070 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000008_130--Hb_000035_070 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000008_130--Hb_000035_070 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000008_130--Hb_000035_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.123879 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 47.4179 0

CAGE analysis