Hb_000315_110

Information

Type -
Description -
Location Contig315: 243960-246184
Sequence    

Annotation

kegg
ID pop:POPTR_0018s01170g
description POPTRDRAFT_578149; gibberellin 3 beta-hydroxylase family protein
nr
ID XP_012078634.1
description PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
swissprot
ID O24648
description Gibberellin 3-beta-dioxygenase 1 OS=Pisum sativum GN=LE PE=1 SV=1
trembl
ID A0A067KKF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13219 PE=3 SV=1
Gene Ontology
ID GO:0016707
description gibberellin 3-beta-dioxygenase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000315_110 0.0 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
2 Hb_000008_010 0.0213058412 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
3 Hb_073973_050 0.0312513372 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
4 Hb_007845_020 0.0400448997 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
5 Hb_090894_010 0.0411836909 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
6 Hb_001414_080 0.0427214154 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
7 Hb_001266_090 0.049079016 - - -
8 Hb_003334_020 0.0519610336 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]
9 Hb_001266_110 0.0567537322 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004057_050 0.0614800867 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
11 Hb_080238_010 0.0647025313 - - Reticuline oxidase precursor, putative [Ricinus communis]
12 Hb_001948_020 0.0659351922 - - -
13 Hb_036291_010 0.0669301551 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
14 Hb_000008_130 0.0723526619 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
15 Hb_000013_040 0.0723526619 - - -
16 Hb_000013_070 0.0723526619 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_000014_180 0.0723526619 - - PREDICTED: endo-1,4-beta-xylanase D-like [Fragaria vesca subsp. vesca]
18 Hb_000021_080 0.0723526619 - - -
19 Hb_000031_270 0.0723526619 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
20 Hb_000035_070 0.0723526619 - - PREDICTED: uncharacterized protein LOC104814513 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_000315_110 Hb_000315_110 Hb_000008_010 Hb_000008_010 Hb_000315_110--Hb_000008_010 Hb_073973_050 Hb_073973_050 Hb_000315_110--Hb_073973_050 Hb_007845_020 Hb_007845_020 Hb_000315_110--Hb_007845_020 Hb_090894_010 Hb_090894_010 Hb_000315_110--Hb_090894_010 Hb_001414_080 Hb_001414_080 Hb_000315_110--Hb_001414_080 Hb_001266_090 Hb_001266_090 Hb_000315_110--Hb_001266_090 Hb_000008_010--Hb_001414_080 Hb_000008_010--Hb_001266_090 Hb_000008_010--Hb_073973_050 Hb_000008_130 Hb_000008_130 Hb_000008_010--Hb_000008_130 Hb_000013_040 Hb_000013_040 Hb_000008_010--Hb_000013_040 Hb_073973_050--Hb_090894_010 Hb_073973_050--Hb_007845_020 Hb_001948_020 Hb_001948_020 Hb_073973_050--Hb_001948_020 Hb_036291_010 Hb_036291_010 Hb_073973_050--Hb_036291_010 Hb_007845_020--Hb_090894_010 Hb_007845_020--Hb_001948_020 Hb_007845_020--Hb_036291_010 Hb_007845_020--Hb_000008_010 Hb_090894_010--Hb_001948_020 Hb_090894_010--Hb_036291_010 Hb_001546_090 Hb_001546_090 Hb_090894_010--Hb_001546_090 Hb_001414_080--Hb_001266_090 Hb_001414_080--Hb_000008_130 Hb_001414_080--Hb_000013_040 Hb_000013_070 Hb_000013_070 Hb_001414_080--Hb_000013_070 Hb_000014_180 Hb_000014_180 Hb_001414_080--Hb_000014_180 Hb_080238_010 Hb_080238_010 Hb_001266_090--Hb_080238_010 Hb_002929_010 Hb_002929_010 Hb_001266_090--Hb_002929_010 Hb_001266_090--Hb_000008_130 Hb_001266_090--Hb_000013_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.159516 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 15.1339 0

CAGE analysis