Hb_080238_010

Information

Type -
Description -
Location Contig80238: 81-869
Sequence    

Annotation

kegg
ID rcu:RCOM_1334770
description Reticuline oxidase precursor, putative (EC:1.21.3.3)
nr
ID XP_002523148.1
description Reticuline oxidase precursor, putative [Ricinus communis]
swissprot
ID Q8GTB6
description Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1
trembl
ID B9SAY8
description Reticuline oxidase, putative OS=Ricinus communis GN=RCOM_1334770 PE=4 SV=1
Gene Ontology
ID GO:0008762
description cannabidiolic acid synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58869: 502-869
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080238_010 0.0 - - Reticuline oxidase precursor, putative [Ricinus communis]
2 Hb_006925_010 0.0417531835 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
3 Hb_003334_020 0.0428913212 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]
4 Hb_001266_090 0.0452831762 - - -
5 Hb_004057_050 0.0466720289 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
6 Hb_000684_060 0.0498589757 - - hypothetical protein POPTR_0006s13170g [Populus trichocarpa]
7 Hb_001266_110 0.0501124152 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000329_160 0.0532478056 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
9 Hb_009026_040 0.0554124844 - - pathogenesis-related family protein [Populus trichocarpa]
10 Hb_000086_710 0.0598033817 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
11 Hb_000008_010 0.0599929311 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
12 Hb_148986_010 0.0600485207 - - unnamed protein product [Vitis vinifera]
13 Hb_002929_010 0.0627319467 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
14 Hb_001414_080 0.062781443 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
15 Hb_003663_030 0.0642133353 - - PREDICTED: early nodulin-93-like [Jatropha curcas]
16 Hb_000315_110 0.0647025313 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
17 Hb_001948_040 0.0664659645 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
18 Hb_019392_010 0.0682403016 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
19 Hb_109163_010 0.0786234163 - - polyphenol oxidase [Hevea brasiliensis]
20 Hb_000008_130 0.0792009454 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_080238_010 Hb_080238_010 Hb_006925_010 Hb_006925_010 Hb_080238_010--Hb_006925_010 Hb_003334_020 Hb_003334_020 Hb_080238_010--Hb_003334_020 Hb_001266_090 Hb_001266_090 Hb_080238_010--Hb_001266_090 Hb_004057_050 Hb_004057_050 Hb_080238_010--Hb_004057_050 Hb_000684_060 Hb_000684_060 Hb_080238_010--Hb_000684_060 Hb_001266_110 Hb_001266_110 Hb_080238_010--Hb_001266_110 Hb_148986_010 Hb_148986_010 Hb_006925_010--Hb_148986_010 Hb_019392_010 Hb_019392_010 Hb_006925_010--Hb_019392_010 Hb_006925_010--Hb_001266_110 Hb_006925_010--Hb_003334_020 Hb_000329_160 Hb_000329_160 Hb_006925_010--Hb_000329_160 Hb_003334_020--Hb_001266_110 Hb_000086_710 Hb_000086_710 Hb_003334_020--Hb_000086_710 Hb_003334_020--Hb_004057_050 Hb_003334_020--Hb_019392_010 Hb_001414_080 Hb_001414_080 Hb_001266_090--Hb_001414_080 Hb_000008_010 Hb_000008_010 Hb_001266_090--Hb_000008_010 Hb_002929_010 Hb_002929_010 Hb_001266_090--Hb_002929_010 Hb_000008_130 Hb_000008_130 Hb_001266_090--Hb_000008_130 Hb_000013_040 Hb_000013_040 Hb_001266_090--Hb_000013_040 Hb_004057_050--Hb_000086_710 Hb_004057_050--Hb_001266_110 Hb_004057_050--Hb_006925_010 Hb_004057_050--Hb_000329_160 Hb_000684_060--Hb_148986_010 Hb_000684_060--Hb_002929_010 Hb_000684_060--Hb_003334_020 Hb_000684_060--Hb_006925_010 Hb_003663_030 Hb_003663_030 Hb_000684_060--Hb_003663_030 Hb_001266_110--Hb_000086_710 Hb_001266_110--Hb_019392_010 Hb_001266_110--Hb_148986_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.248832 0.265928 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 49.2694 0.108346

CAGE analysis