Hb_003663_030

Information

Type -
Description -
Location Contig3663: 29066-30053
Sequence    

Annotation

kegg
ID pop:POPTR_0004s19470g
description POPTRDRAFT_831341; hypothetical protein
nr
ID XP_012078085.1
description PREDICTED: early nodulin-93-like [Jatropha curcas]
swissprot
ID Q02921
description Early nodulin-93 OS=Glycine max PE=2 SV=1
trembl
ID A0A067KM78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13695 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37694: 28981-29971
cDNA
(Sanger)
(ID:Location)		 040_K23.ab1: 28981-29969

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003663_030 0.0 - - PREDICTED: early nodulin-93-like [Jatropha curcas]
2 Hb_002929_010 0.041171787 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
3 Hb_001266_090 0.0526156743 - - -
4 Hb_000684_060 0.0566621337 - - hypothetical protein POPTR_0006s13170g [Populus trichocarpa]
5 Hb_000008_130 0.0589719649 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
6 Hb_000013_040 0.0589719649 - - -
7 Hb_000013_070 0.0589719649 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_000014_180 0.0589719649 - - PREDICTED: endo-1,4-beta-xylanase D-like [Fragaria vesca subsp. vesca]
9 Hb_000021_080 0.0589719649 - - -
10 Hb_000031_270 0.0589719649 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
11 Hb_000035_070 0.0589719649 - - PREDICTED: uncharacterized protein LOC104814513 [Tarenaya hassleriana]
12 Hb_000041_140 0.0589719649 - - -
13 Hb_000043_130 0.0589719649 - - -
14 Hb_000045_240 0.0589719649 - - -
15 Hb_000056_270 0.0589719649 - - Origin recognition complex subunit, putative [Ricinus communis]
16 Hb_000057_150 0.0589719649 - - hypothetical protein EUTSA_v10009202mg [Eutrema salsugineum]
17 Hb_000059_250 0.0589719649 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
18 Hb_000062_160 0.0589719649 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
19 Hb_000068_050 0.0589719649 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
20 Hb_000073_060 0.0589719649 - - hypothetical protein L484_026849 [Morus notabilis]

Gene co-expression network

sample Hb_003663_030 Hb_003663_030 Hb_002929_010 Hb_002929_010 Hb_003663_030--Hb_002929_010 Hb_001266_090 Hb_001266_090 Hb_003663_030--Hb_001266_090 Hb_000684_060 Hb_000684_060 Hb_003663_030--Hb_000684_060 Hb_000008_130 Hb_000008_130 Hb_003663_030--Hb_000008_130 Hb_000013_040 Hb_000013_040 Hb_003663_030--Hb_000013_040 Hb_000013_070 Hb_000013_070 Hb_003663_030--Hb_000013_070 Hb_002929_010--Hb_000008_130 Hb_002929_010--Hb_000013_040 Hb_002929_010--Hb_000013_070 Hb_000014_180 Hb_000014_180 Hb_002929_010--Hb_000014_180 Hb_000021_080 Hb_000021_080 Hb_002929_010--Hb_000021_080 Hb_000031_270 Hb_000031_270 Hb_002929_010--Hb_000031_270 Hb_001414_080 Hb_001414_080 Hb_001266_090--Hb_001414_080 Hb_000008_010 Hb_000008_010 Hb_001266_090--Hb_000008_010 Hb_080238_010 Hb_080238_010 Hb_001266_090--Hb_080238_010 Hb_001266_090--Hb_002929_010 Hb_001266_090--Hb_000008_130 Hb_001266_090--Hb_000013_040 Hb_148986_010 Hb_148986_010 Hb_000684_060--Hb_148986_010 Hb_000684_060--Hb_080238_010 Hb_000684_060--Hb_002929_010 Hb_003334_020 Hb_003334_020 Hb_000684_060--Hb_003334_020 Hb_006925_010 Hb_006925_010 Hb_000684_060--Hb_006925_010 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000035_070 Hb_000035_070 Hb_000008_130--Hb_000035_070 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000008_130--Hb_000035_070 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000008_130--Hb_000035_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.263963 0 0.342729 0.0569439 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 94.9892 0

CAGE analysis