Hb_003334_080

Information

Type -
Description -
Location Contig3334: 96989-98578
Sequence    

Annotation

kegg
ID rcu:RCOM_1335230
description Reticuline oxidase precursor, putative (EC:1.21.3.3)
nr
ID XP_002523154.1
description Reticuline oxidase precursor, putative [Ricinus communis]
swissprot
ID Q9SVG4
description Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2
trembl
ID B9SAZ4
description Reticuline oxidase, putative OS=Ricinus communis GN=RCOM_1335230 PE=4 SV=1
Gene Ontology
ID GO:0008762
description reticuline oxidase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34988: 96956-98680 , PASA_asmbl_34989: 84465-97423
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003334_080 0.0 - - Reticuline oxidase precursor, putative [Ricinus communis]
2 Hb_000141_070 0.0287676345 - - l-lactate dehydrogenase, putative [Ricinus communis]
3 Hb_058620_040 0.0408109122 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
4 Hb_009568_010 0.0442055926 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
5 Hb_002835_020 0.045109729 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
6 Hb_002553_170 0.0453497137 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
7 Hb_058620_050 0.0455277425 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
8 Hb_000500_190 0.0546221301 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
9 Hb_001456_040 0.0552938735 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
10 Hb_001930_060 0.0560009173 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
11 Hb_039363_010 0.0560239268 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
12 Hb_007483_040 0.0566206581 - - PREDICTED: protein SRG1-like [Jatropha curcas]
13 Hb_000712_070 0.0574077397 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000446_100 0.057846476 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
15 Hb_004693_010 0.0586731651 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
16 Hb_000388_160 0.0611055179 - - xyloglucan endo-1 family protein [Populus trichocarpa]
17 Hb_001301_020 0.0631249505 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
18 Hb_000563_060 0.0635331296 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
19 Hb_003188_020 0.0637091198 - - chitinase, putative [Ricinus communis]
20 Hb_000229_080 0.0648803957 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]

Gene co-expression network

sample Hb_003334_080 Hb_003334_080 Hb_000141_070 Hb_000141_070 Hb_003334_080--Hb_000141_070 Hb_058620_040 Hb_058620_040 Hb_003334_080--Hb_058620_040 Hb_009568_010 Hb_009568_010 Hb_003334_080--Hb_009568_010 Hb_002835_020 Hb_002835_020 Hb_003334_080--Hb_002835_020 Hb_002553_170 Hb_002553_170 Hb_003334_080--Hb_002553_170 Hb_058620_050 Hb_058620_050 Hb_003334_080--Hb_058620_050 Hb_000141_070--Hb_058620_050 Hb_000141_070--Hb_009568_010 Hb_007483_040 Hb_007483_040 Hb_000141_070--Hb_007483_040 Hb_000141_070--Hb_058620_040 Hb_001456_040 Hb_001456_040 Hb_000141_070--Hb_001456_040 Hb_058620_040--Hb_058620_050 Hb_004693_010 Hb_004693_010 Hb_058620_040--Hb_004693_010 Hb_006925_010 Hb_006925_010 Hb_058620_040--Hb_006925_010 Hb_000086_710 Hb_000086_710 Hb_058620_040--Hb_000086_710 Hb_009568_010--Hb_007483_040 Hb_000446_100 Hb_000446_100 Hb_009568_010--Hb_000446_100 Hb_009568_010--Hb_001456_040 Hb_020480_050 Hb_020480_050 Hb_009568_010--Hb_020480_050 Hb_039363_010 Hb_039363_010 Hb_002835_020--Hb_039363_010 Hb_000563_060 Hb_000563_060 Hb_002835_020--Hb_000563_060 Hb_002835_020--Hb_002553_170 Hb_000388_160 Hb_000388_160 Hb_002835_020--Hb_000388_160 Hb_001930_060 Hb_001930_060 Hb_002835_020--Hb_001930_060 Hb_002553_170--Hb_001930_060 Hb_002553_170--Hb_000563_060 Hb_003188_020 Hb_003188_020 Hb_002553_170--Hb_003188_020 Hb_002553_170--Hb_000141_070 Hb_058620_050--Hb_004693_010 Hb_058620_050--Hb_009568_010 Hb_058620_050--Hb_007483_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.218832 0.236825 0.27042 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 17.3154 0.0481927

CAGE analysis