Hb_001456_040

Information

Type -
Description -
Location Contig1456: 63482-70710
Sequence    

Annotation

kegg
ID rcu:RCOM_0865350
description NAD dependent epimerase/dehydratase, putative (EC:1.3.1.45)
nr
ID XP_002519850.1
description NAD dependent epimerase/dehydratase, putative [Ricinus communis]
swissprot
ID P52581
description Isoflavone reductase homolog OS=Lupinus albus PE=2 SV=1
trembl
ID B9S1I5
description NAD dependent epimerase/dehydratase, putative OS=Ricinus communis GN=RCOM_0865350 PE=4 SV=1
Gene Ontology
ID GO:0047526
description isoflavone reductase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001456_040 0.0 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
2 Hb_020480_050 0.0410153173 - - putative wall-associated kinase family protein [Populus trichocarpa]
3 Hb_000446_100 0.0424030279 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
4 Hb_009568_010 0.0494448901 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
5 Hb_000500_190 0.0507655003 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
6 Hb_000141_070 0.0516338566 - - l-lactate dehydrogenase, putative [Ricinus communis]
7 Hb_004254_070 0.0520055424 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
8 Hb_003334_080 0.0552938735 - - Reticuline oxidase precursor, putative [Ricinus communis]
9 Hb_002553_170 0.0570051273 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
10 Hb_003188_020 0.0574594526 - - chitinase, putative [Ricinus communis]
11 Hb_014034_020 0.0594377112 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
12 Hb_001301_020 0.0609046504 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
13 Hb_007483_040 0.06163594 - - PREDICTED: protein SRG1-like [Jatropha curcas]
14 Hb_000229_080 0.0673880756 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
15 Hb_153208_010 0.0691257278 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
16 Hb_002835_020 0.0724492233 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
17 Hb_000563_080 0.0733210315 - - -
18 Hb_000563_060 0.0752205658 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
19 Hb_058620_040 0.0793207882 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
20 Hb_058620_050 0.0797418059 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_001456_040 Hb_001456_040 Hb_020480_050 Hb_020480_050 Hb_001456_040--Hb_020480_050 Hb_000446_100 Hb_000446_100 Hb_001456_040--Hb_000446_100 Hb_009568_010 Hb_009568_010 Hb_001456_040--Hb_009568_010 Hb_000500_190 Hb_000500_190 Hb_001456_040--Hb_000500_190 Hb_000141_070 Hb_000141_070 Hb_001456_040--Hb_000141_070 Hb_004254_070 Hb_004254_070 Hb_001456_040--Hb_004254_070 Hb_007483_040 Hb_007483_040 Hb_020480_050--Hb_007483_040 Hb_020480_050--Hb_000446_100 Hb_020480_050--Hb_009568_010 Hb_010697_030 Hb_010697_030 Hb_020480_050--Hb_010697_030 Hb_020480_050--Hb_004254_070 Hb_000446_100--Hb_004254_070 Hb_001301_020 Hb_001301_020 Hb_000446_100--Hb_001301_020 Hb_003188_020 Hb_003188_020 Hb_000446_100--Hb_003188_020 Hb_000446_100--Hb_000500_190 Hb_014034_020 Hb_014034_020 Hb_000446_100--Hb_014034_020 Hb_009568_010--Hb_000141_070 Hb_009568_010--Hb_007483_040 Hb_003334_080 Hb_003334_080 Hb_009568_010--Hb_003334_080 Hb_009568_010--Hb_000446_100 Hb_000229_080 Hb_000229_080 Hb_000500_190--Hb_000229_080 Hb_000500_190--Hb_014034_020 Hb_000500_190--Hb_004254_070 Hb_000500_190--Hb_003188_020 Hb_000500_190--Hb_001301_020 Hb_000141_070--Hb_003334_080 Hb_058620_050 Hb_058620_050 Hb_000141_070--Hb_058620_050 Hb_000141_070--Hb_007483_040 Hb_058620_040 Hb_058620_040 Hb_000141_070--Hb_058620_040 Hb_004254_070--Hb_014034_020 Hb_004254_070--Hb_003188_020 Hb_004254_070--Hb_001301_020 Hb_000025_250 Hb_000025_250 Hb_004254_070--Hb_000025_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.320786 0.36329 0.184593 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0293674 0 19.105 0

CAGE analysis