Hb_010697_030

Information

Type -
Description -
Location Contig10697: 24371-26694
Sequence    

Annotation

kegg
ID rcu:RCOM_1313620
description endo-1,4-beta-glucanase, putative (EC:3.2.1.4)
nr
ID XP_002518918.1
description endo-1,4-beta-glucanase, putative [Ricinus communis]
swissprot
ID P05522
description Endoglucanase 1 OS=Persea americana GN=CEL1 PE=2 SV=1
trembl
ID B9RYU9
description Endoglucanase OS=Ricinus communis GN=RCOM_1313620 PE=3 SV=1
Gene Ontology
ID GO:0004553
description endo- -beta-glucanase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02121: 24326-24549 , PASA_asmbl_02122: 25357-25764
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010697_030 0.0 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
2 Hb_007483_040 0.0385458857 - - PREDICTED: protein SRG1-like [Jatropha curcas]
3 Hb_020480_050 0.0518087525 - - putative wall-associated kinase family protein [Populus trichocarpa]
4 Hb_000503_040 0.0704657752 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
5 Hb_000836_400 0.0741181816 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 1 [Jatropha curcas]
6 Hb_000141_070 0.0770437743 - - l-lactate dehydrogenase, putative [Ricinus communis]
7 Hb_009568_010 0.0774958114 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
8 Hb_005614_040 0.0788062482 - - unnamed protein product [Coffea canephora]
9 Hb_000712_070 0.0819146072 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001456_040 0.0823902868 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
11 Hb_000446_100 0.0845897158 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
12 Hb_003090_070 0.0870121738 - - PREDICTED: laccase-7 [Jatropha curcas]
13 Hb_003334_080 0.0897328187 - - Reticuline oxidase precursor, putative [Ricinus communis]
14 Hb_001699_240 0.092409483 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
15 Hb_058620_050 0.0928557371 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
16 Hb_003891_060 0.0949642317 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
17 Hb_002805_230 0.0952628577 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
18 Hb_000155_140 0.0966308458 - - o-methyltransferase, putative [Ricinus communis]
19 Hb_001901_090 0.0969361258 - - metal ion binding protein, putative [Ricinus communis]
20 Hb_000352_080 0.0972873712 - - PREDICTED: lipid transfer-like protein VAS [Jatropha curcas]

Gene co-expression network

sample Hb_010697_030 Hb_010697_030 Hb_007483_040 Hb_007483_040 Hb_010697_030--Hb_007483_040 Hb_020480_050 Hb_020480_050 Hb_010697_030--Hb_020480_050 Hb_000503_040 Hb_000503_040 Hb_010697_030--Hb_000503_040 Hb_000836_400 Hb_000836_400 Hb_010697_030--Hb_000836_400 Hb_000141_070 Hb_000141_070 Hb_010697_030--Hb_000141_070 Hb_009568_010 Hb_009568_010 Hb_010697_030--Hb_009568_010 Hb_007483_040--Hb_020480_050 Hb_007483_040--Hb_009568_010 Hb_007483_040--Hb_000141_070 Hb_003334_080 Hb_003334_080 Hb_007483_040--Hb_003334_080 Hb_000712_070 Hb_000712_070 Hb_007483_040--Hb_000712_070 Hb_001456_040 Hb_001456_040 Hb_020480_050--Hb_001456_040 Hb_000446_100 Hb_000446_100 Hb_020480_050--Hb_000446_100 Hb_020480_050--Hb_009568_010 Hb_004254_070 Hb_004254_070 Hb_020480_050--Hb_004254_070 Hb_001901_090 Hb_001901_090 Hb_000503_040--Hb_001901_090 Hb_005614_040 Hb_005614_040 Hb_000503_040--Hb_005614_040 Hb_000503_040--Hb_007483_040 Hb_000503_040--Hb_000712_070 Hb_001699_240 Hb_001699_240 Hb_000503_040--Hb_001699_240 Hb_015146_010 Hb_015146_010 Hb_000836_400--Hb_015146_010 Hb_000836_400--Hb_005614_040 Hb_000069_050 Hb_000069_050 Hb_000836_400--Hb_000069_050 Hb_000836_400--Hb_007483_040 Hb_000059_100 Hb_000059_100 Hb_000836_400--Hb_000059_100 Hb_000141_070--Hb_003334_080 Hb_058620_050 Hb_058620_050 Hb_000141_070--Hb_058620_050 Hb_000141_070--Hb_009568_010 Hb_058620_040 Hb_058620_040 Hb_000141_070--Hb_058620_040 Hb_000141_070--Hb_001456_040 Hb_009568_010--Hb_003334_080 Hb_009568_010--Hb_000446_100 Hb_009568_010--Hb_001456_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.800612 1.9707 0.690822 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 39.3765 0.046735

CAGE analysis