Hb_000059_100

Information

Type -
Description -
Location Contig59: 93326-94354
Sequence    

Annotation

kegg
ID rcu:RCOM_0559540
description Basic blue protein, putative
nr
ID XP_002520251.1
description Basic blue protein, putative [Ricinus communis]
swissprot
ID P00303
description Basic blue protein OS=Cucumis sativus PE=1 SV=1
trembl
ID B9S2N2
description Basic blue protein, putative OS=Ricinus communis GN=RCOM_0559540 PE=4 SV=1
Gene Ontology
ID GO:0009055
description basic blue

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50161: 93317-94141
cDNA
(Sanger)
(ID:Location)		 001_I22.ab1: 93390-94138

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_100 0.0 - - Basic blue protein, putative [Ricinus communis]
2 Hb_003090_070 0.0635807118 - - PREDICTED: laccase-7 [Jatropha curcas]
3 Hb_005614_040 0.0637091619 - - unnamed protein product [Coffea canephora]
4 Hb_002805_230 0.0688472025 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
5 Hb_004693_010 0.0689348691 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
6 Hb_000318_440 0.070527332 - - PREDICTED: allene oxide synthase 2-like [Jatropha curcas]
7 Hb_007532_050 0.0721221036 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
8 Hb_012532_020 0.074416125 - - Isoflavone reductase, putative [Ricinus communis]
9 Hb_000712_070 0.0790299052 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007483_040 0.0825217861 - - PREDICTED: protein SRG1-like [Jatropha curcas]
11 Hb_000127_250 0.0825703627 - - Alliin lyase precursor, putative [Ricinus communis]
12 Hb_001699_240 0.0829883271 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
13 Hb_058620_050 0.0833719224 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
14 Hb_000141_070 0.0921001533 - - l-lactate dehydrogenase, putative [Ricinus communis]
15 Hb_058620_040 0.0942791841 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
16 Hb_000503_040 0.0966373991 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
17 Hb_000487_150 0.0971157313 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
18 Hb_010697_030 0.0973611657 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
19 Hb_185391_010 0.0982167742 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
20 Hb_009568_010 0.09937865 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]

Gene co-expression network

sample Hb_000059_100 Hb_000059_100 Hb_003090_070 Hb_003090_070 Hb_000059_100--Hb_003090_070 Hb_005614_040 Hb_005614_040 Hb_000059_100--Hb_005614_040 Hb_002805_230 Hb_002805_230 Hb_000059_100--Hb_002805_230 Hb_004693_010 Hb_004693_010 Hb_000059_100--Hb_004693_010 Hb_000318_440 Hb_000318_440 Hb_000059_100--Hb_000318_440 Hb_007532_050 Hb_007532_050 Hb_000059_100--Hb_007532_050 Hb_003090_070--Hb_002805_230 Hb_000712_070 Hb_000712_070 Hb_003090_070--Hb_000712_070 Hb_001134_040 Hb_001134_040 Hb_003090_070--Hb_001134_040 Hb_003090_070--Hb_004693_010 Hb_003090_070--Hb_007532_050 Hb_007483_040 Hb_007483_040 Hb_005614_040--Hb_007483_040 Hb_000503_040 Hb_000503_040 Hb_005614_040--Hb_000503_040 Hb_009568_010 Hb_009568_010 Hb_005614_040--Hb_009568_010 Hb_001699_240 Hb_001699_240 Hb_005614_040--Hb_001699_240 Hb_185391_010 Hb_185391_010 Hb_005614_040--Hb_185391_010 Hb_002805_230--Hb_000712_070 Hb_002805_230--Hb_001134_040 Hb_002805_230--Hb_007532_050 Hb_058620_010 Hb_058620_010 Hb_002805_230--Hb_058620_010 Hb_002805_230--Hb_004693_010 Hb_058620_050 Hb_058620_050 Hb_004693_010--Hb_058620_050 Hb_058620_040 Hb_058620_040 Hb_004693_010--Hb_058620_040 Hb_004693_010--Hb_000712_070 Hb_000141_070 Hb_000141_070 Hb_004693_010--Hb_000141_070 Hb_003334_080 Hb_003334_080 Hb_004693_010--Hb_003334_080 Hb_004693_010--Hb_000318_440 Hb_039562_010 Hb_039562_010 Hb_000318_440--Hb_039562_010 Hb_000318_440--Hb_007532_050 Hb_000318_440--Hb_002805_230 Hb_000318_440--Hb_003090_070 Hb_000076_200 Hb_000076_200 Hb_007532_050--Hb_000076_200 Hb_007527_020 Hb_007527_020 Hb_007532_050--Hb_007527_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.189883 3.87265 15.4469 20.8632 0.0981839 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.086156 420.653 3.2529

CAGE analysis