Hb_003090_070

Information

Type -
Description -
Location Contig3090: 73532-76526
Sequence    

Annotation

kegg
ID rcu:RCOM_0086740
description laccase, putative (EC:1.10.3.3)
nr
ID XP_012087960.1
description PREDICTED: laccase-7 [Jatropha curcas]
swissprot
ID Q9SR40
description Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=1
trembl
ID A0A067JKU4
description Laccase OS=Jatropha curcas GN=JCGZ_25081 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase-7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32637: 73519-76460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003090_070 0.0 - - PREDICTED: laccase-7 [Jatropha curcas]
2 Hb_002805_230 0.0386110184 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
3 Hb_000712_070 0.0457125282 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001134_040 0.0623934347 - - PREDICTED: EG45-like domain containing protein [Jatropha curcas]
5 Hb_004693_010 0.0630321516 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
6 Hb_000059_100 0.0635807118 - - Basic blue protein, putative [Ricinus communis]
7 Hb_007532_050 0.0678631139 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
8 Hb_007483_040 0.0733198625 - - PREDICTED: protein SRG1-like [Jatropha curcas]
9 Hb_000141_070 0.0752799859 - - l-lactate dehydrogenase, putative [Ricinus communis]
10 Hb_058620_010 0.0782478945 - - cytochrome P450, putative [Ricinus communis]
11 Hb_000318_440 0.0793468401 - - PREDICTED: allene oxide synthase 2-like [Jatropha curcas]
12 Hb_001699_240 0.0796051095 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
13 Hb_000503_040 0.0824847943 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
14 Hb_003334_080 0.0853499495 - - Reticuline oxidase precursor, putative [Ricinus communis]
15 Hb_007417_020 0.085622293 - - Reticuline oxidase precursor, putative [Ricinus communis]
16 Hb_039562_010 0.0863997468 - - PREDICTED: protein SRG1-like [Jatropha curcas]
17 Hb_010697_030 0.0870121738 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
18 Hb_005614_040 0.0871856373 - - unnamed protein product [Coffea canephora]
19 Hb_009568_010 0.0880475892 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
20 Hb_058620_050 0.0894258969 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_003090_070 Hb_003090_070 Hb_002805_230 Hb_002805_230 Hb_003090_070--Hb_002805_230 Hb_000712_070 Hb_000712_070 Hb_003090_070--Hb_000712_070 Hb_001134_040 Hb_001134_040 Hb_003090_070--Hb_001134_040 Hb_004693_010 Hb_004693_010 Hb_003090_070--Hb_004693_010 Hb_000059_100 Hb_000059_100 Hb_003090_070--Hb_000059_100 Hb_007532_050 Hb_007532_050 Hb_003090_070--Hb_007532_050 Hb_002805_230--Hb_000712_070 Hb_002805_230--Hb_001134_040 Hb_002805_230--Hb_007532_050 Hb_058620_010 Hb_058620_010 Hb_002805_230--Hb_058620_010 Hb_002805_230--Hb_004693_010 Hb_000141_070 Hb_000141_070 Hb_000712_070--Hb_000141_070 Hb_003334_080 Hb_003334_080 Hb_000712_070--Hb_003334_080 Hb_000712_070--Hb_004693_010 Hb_007483_040 Hb_007483_040 Hb_000712_070--Hb_007483_040 Hb_001134_040--Hb_058620_010 Hb_001134_040--Hb_000712_070 Hb_007417_020 Hb_007417_020 Hb_001134_040--Hb_007417_020 Hb_135392_010 Hb_135392_010 Hb_001134_040--Hb_135392_010 Hb_058620_050 Hb_058620_050 Hb_004693_010--Hb_058620_050 Hb_058620_040 Hb_058620_040 Hb_004693_010--Hb_058620_040 Hb_004693_010--Hb_000141_070 Hb_004693_010--Hb_003334_080 Hb_000318_440 Hb_000318_440 Hb_004693_010--Hb_000318_440 Hb_005614_040 Hb_005614_040 Hb_000059_100--Hb_005614_040 Hb_000059_100--Hb_002805_230 Hb_000059_100--Hb_004693_010 Hb_000059_100--Hb_000318_440 Hb_000059_100--Hb_007532_050 Hb_007532_050--Hb_000318_440 Hb_000076_200 Hb_000076_200 Hb_007532_050--Hb_000076_200 Hb_007527_020 Hb_007527_020 Hb_007532_050--Hb_007527_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.652975 0.853892 1.03751 0 0.0293863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0344376 29.8763 0.307017

CAGE analysis