Hb_007417_020

Information

Type -
Description -
Location Contig7417: 25823-28727
Sequence    

Annotation

kegg
ID rcu:RCOM_1335790
description Reticuline oxidase precursor, putative (EC:1.21.3.3)
nr
ID XP_002523160.1
description Reticuline oxidase precursor, putative [Ricinus communis]
swissprot
ID Q8GTB6
description Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1
trembl
ID B9SB00
description Reticuline oxidase, putative OS=Ricinus communis GN=RCOM_1335790 PE=4 SV=1
Gene Ontology
ID GO:0008762
description tetrahydrocannabinolic acid synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56461: 28293-28733
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007417_020 0.0 - - Reticuline oxidase precursor, putative [Ricinus communis]
2 Hb_001464_010 0.0337588201 - - PREDICTED: putative receptor-like protein kinase At4g00960 isoform X1 [Populus euphratica]
3 Hb_135392_010 0.0483007251 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
4 Hb_001134_040 0.06421369 - - PREDICTED: EG45-like domain containing protein [Jatropha curcas]
5 Hb_007491_010 0.0698953284 - - Spotted leaf protein, putative [Ricinus communis]
6 Hb_003090_070 0.085622293 - - PREDICTED: laccase-7 [Jatropha curcas]
7 Hb_002805_230 0.0897425998 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
8 Hb_058620_010 0.0910770535 - - cytochrome P450, putative [Ricinus communis]
9 Hb_003237_040 0.0941634273 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
10 Hb_004055_180 0.0969289291 - - cell wall invertase [Manihot esculenta]
11 Hb_000352_080 0.0972076357 - - PREDICTED: lipid transfer-like protein VAS [Jatropha curcas]
12 Hb_000712_070 0.0997540386 - - conserved hypothetical protein [Ricinus communis]
13 Hb_039562_010 0.0998270608 - - PREDICTED: protein SRG1-like [Jatropha curcas]
14 Hb_097908_010 0.0998635651 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 isoform X2 [Jatropha curcas]
15 Hb_004097_080 0.1019341517 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
16 Hb_000155_140 0.1025628041 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_010697_030 0.1032352454 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
18 Hb_007483_040 0.1108187243 - - PREDICTED: protein SRG1-like [Jatropha curcas]
19 Hb_000059_100 0.1141987029 - - Basic blue protein, putative [Ricinus communis]
20 Hb_002173_080 0.117446365 - - alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007417_020 Hb_007417_020 Hb_001464_010 Hb_001464_010 Hb_007417_020--Hb_001464_010 Hb_135392_010 Hb_135392_010 Hb_007417_020--Hb_135392_010 Hb_001134_040 Hb_001134_040 Hb_007417_020--Hb_001134_040 Hb_007491_010 Hb_007491_010 Hb_007417_020--Hb_007491_010 Hb_003090_070 Hb_003090_070 Hb_007417_020--Hb_003090_070 Hb_002805_230 Hb_002805_230 Hb_007417_020--Hb_002805_230 Hb_001464_010--Hb_135392_010 Hb_001464_010--Hb_001134_040 Hb_004055_180 Hb_004055_180 Hb_001464_010--Hb_004055_180 Hb_001464_010--Hb_007491_010 Hb_097908_010 Hb_097908_010 Hb_001464_010--Hb_097908_010 Hb_135392_010--Hb_007491_010 Hb_135392_010--Hb_001134_040 Hb_058620_010 Hb_058620_010 Hb_135392_010--Hb_058620_010 Hb_004097_080 Hb_004097_080 Hb_135392_010--Hb_004097_080 Hb_001134_040--Hb_002805_230 Hb_001134_040--Hb_058620_010 Hb_001134_040--Hb_003090_070 Hb_000712_070 Hb_000712_070 Hb_001134_040--Hb_000712_070 Hb_003237_040 Hb_003237_040 Hb_007491_010--Hb_003237_040 Hb_004448_030 Hb_004448_030 Hb_007491_010--Hb_004448_030 Hb_007491_010--Hb_004097_080 Hb_003090_070--Hb_002805_230 Hb_003090_070--Hb_000712_070 Hb_004693_010 Hb_004693_010 Hb_003090_070--Hb_004693_010 Hb_000059_100 Hb_000059_100 Hb_003090_070--Hb_000059_100 Hb_007532_050 Hb_007532_050 Hb_003090_070--Hb_007532_050 Hb_002805_230--Hb_000712_070 Hb_002805_230--Hb_007532_050 Hb_002805_230--Hb_058620_010 Hb_002805_230--Hb_004693_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.220071 0.379861 0.144961 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.11515 0.2354

CAGE analysis