Hb_002805_230

Information

Type -
Description -
Location Contig2805: 196543-199116
Sequence    

Annotation

kegg
ID tcc:TCM_001905
description TT12-2 MATE transporter
nr
ID XP_012074474.1
description PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID A0A061DSU4
description MATE efflux family protein OS=Theobroma cacao GN=TCM_001905 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002805_230 0.0 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
2 Hb_003090_070 0.0386110184 - - PREDICTED: laccase-7 [Jatropha curcas]
3 Hb_000712_070 0.0431113643 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001134_040 0.0476715725 - - PREDICTED: EG45-like domain containing protein [Jatropha curcas]
5 Hb_007532_050 0.0648229378 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
6 Hb_058620_010 0.0653303965 - - cytochrome P450, putative [Ricinus communis]
7 Hb_004693_010 0.0685926906 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
8 Hb_000059_100 0.0688472025 - - Basic blue protein, putative [Ricinus communis]
9 Hb_001699_240 0.070275011 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
10 Hb_007527_020 0.0710963616 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
11 Hb_000318_440 0.0787111921 - - PREDICTED: allene oxide synthase 2-like [Jatropha curcas]
12 Hb_000503_040 0.0800654336 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
13 Hb_000141_070 0.0811067137 - - l-lactate dehydrogenase, putative [Ricinus communis]
14 Hb_007483_040 0.0812103112 - - PREDICTED: protein SRG1-like [Jatropha curcas]
15 Hb_039562_010 0.0842409024 - - PREDICTED: protein SRG1-like [Jatropha curcas]
16 Hb_000352_080 0.0877182401 - - PREDICTED: lipid transfer-like protein VAS [Jatropha curcas]
17 Hb_007417_020 0.0897425998 - - Reticuline oxidase precursor, putative [Ricinus communis]
18 Hb_003334_080 0.0906793249 - - Reticuline oxidase precursor, putative [Ricinus communis]
19 Hb_005614_040 0.0916430911 - - unnamed protein product [Coffea canephora]
20 Hb_009568_010 0.092175283 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]

Gene co-expression network

sample Hb_002805_230 Hb_002805_230 Hb_003090_070 Hb_003090_070 Hb_002805_230--Hb_003090_070 Hb_000712_070 Hb_000712_070 Hb_002805_230--Hb_000712_070 Hb_001134_040 Hb_001134_040 Hb_002805_230--Hb_001134_040 Hb_007532_050 Hb_007532_050 Hb_002805_230--Hb_007532_050 Hb_058620_010 Hb_058620_010 Hb_002805_230--Hb_058620_010 Hb_004693_010 Hb_004693_010 Hb_002805_230--Hb_004693_010 Hb_003090_070--Hb_000712_070 Hb_003090_070--Hb_001134_040 Hb_003090_070--Hb_004693_010 Hb_000059_100 Hb_000059_100 Hb_003090_070--Hb_000059_100 Hb_003090_070--Hb_007532_050 Hb_000141_070 Hb_000141_070 Hb_000712_070--Hb_000141_070 Hb_003334_080 Hb_003334_080 Hb_000712_070--Hb_003334_080 Hb_000712_070--Hb_004693_010 Hb_007483_040 Hb_007483_040 Hb_000712_070--Hb_007483_040 Hb_001134_040--Hb_058620_010 Hb_001134_040--Hb_000712_070 Hb_007417_020 Hb_007417_020 Hb_001134_040--Hb_007417_020 Hb_135392_010 Hb_135392_010 Hb_001134_040--Hb_135392_010 Hb_007532_050--Hb_000059_100 Hb_000318_440 Hb_000318_440 Hb_007532_050--Hb_000318_440 Hb_000076_200 Hb_000076_200 Hb_007532_050--Hb_000076_200 Hb_007527_020 Hb_007527_020 Hb_007532_050--Hb_007527_020 Hb_058620_010--Hb_000712_070 Hb_004097_080 Hb_004097_080 Hb_058620_010--Hb_004097_080 Hb_058620_010--Hb_135392_010 Hb_058620_010--Hb_003090_070 Hb_058620_050 Hb_058620_050 Hb_004693_010--Hb_058620_050 Hb_058620_040 Hb_058620_040 Hb_004693_010--Hb_058620_040 Hb_004693_010--Hb_000141_070 Hb_004693_010--Hb_003334_080 Hb_004693_010--Hb_000318_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.16916 4.14766 6.2072 0.0116632 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0529831 0.145902 0.0393589 159.916 1.71002

CAGE analysis