Hb_058620_010

Information

Type -
Description -
Location Contig58620: 28915-30718
Sequence    

Annotation

kegg
ID rcu:RCOM_1574180
description cytochrome P450, putative (EC:1.14.13.68)
nr
ID XP_002513333.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID O81974
description Cytochrome P450 71D8 OS=Glycine max GN=CYP71D8 PE=2 SV=1
trembl
ID B9RHW4
description CYP726A14 OS=Ricinus communis GN=RCOM_1574180 PE=2 SV=1
Gene Ontology
ID GO:0016709
description cytochrome

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49981: 29944-30637 , PASA_asmbl_49982: 29196-30189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058620_010 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_001134_040 0.0565132443 - - PREDICTED: EG45-like domain containing protein [Jatropha curcas]
3 Hb_000712_070 0.0644542354 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002805_230 0.0653303965 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
5 Hb_004097_080 0.0710895696 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
6 Hb_135392_010 0.0756460203 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
7 Hb_003090_070 0.0782478945 - - PREDICTED: laccase-7 [Jatropha curcas]
8 Hb_000155_140 0.0812857655 - - o-methyltransferase, putative [Ricinus communis]
9 Hb_003334_080 0.0830158569 - - Reticuline oxidase precursor, putative [Ricinus communis]
10 Hb_000141_070 0.0832355987 - - l-lactate dehydrogenase, putative [Ricinus communis]
11 Hb_000352_080 0.0838334334 - - PREDICTED: lipid transfer-like protein VAS [Jatropha curcas]
12 Hb_009780_060 0.0838806331 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
13 Hb_039562_010 0.0841263542 - - PREDICTED: protein SRG1-like [Jatropha curcas]
14 Hb_000229_080 0.0851392976 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
15 Hb_002835_020 0.0870731379 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
16 Hb_004693_010 0.0882555425 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
17 Hb_000500_190 0.0907107013 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
18 Hb_007417_020 0.0910770535 - - Reticuline oxidase precursor, putative [Ricinus communis]
19 Hb_012506_080 0.0941600499 - - amino acid transporter, putative [Ricinus communis]
20 Hb_000446_100 0.0942821857 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_058620_010 Hb_058620_010 Hb_001134_040 Hb_001134_040 Hb_058620_010--Hb_001134_040 Hb_000712_070 Hb_000712_070 Hb_058620_010--Hb_000712_070 Hb_002805_230 Hb_002805_230 Hb_058620_010--Hb_002805_230 Hb_004097_080 Hb_004097_080 Hb_058620_010--Hb_004097_080 Hb_135392_010 Hb_135392_010 Hb_058620_010--Hb_135392_010 Hb_003090_070 Hb_003090_070 Hb_058620_010--Hb_003090_070 Hb_001134_040--Hb_002805_230 Hb_001134_040--Hb_003090_070 Hb_001134_040--Hb_000712_070 Hb_007417_020 Hb_007417_020 Hb_001134_040--Hb_007417_020 Hb_001134_040--Hb_135392_010 Hb_000712_070--Hb_002805_230 Hb_000712_070--Hb_003090_070 Hb_000141_070 Hb_000141_070 Hb_000712_070--Hb_000141_070 Hb_003334_080 Hb_003334_080 Hb_000712_070--Hb_003334_080 Hb_004693_010 Hb_004693_010 Hb_000712_070--Hb_004693_010 Hb_007483_040 Hb_007483_040 Hb_000712_070--Hb_007483_040 Hb_002805_230--Hb_003090_070 Hb_007532_050 Hb_007532_050 Hb_002805_230--Hb_007532_050 Hb_002805_230--Hb_004693_010 Hb_004097_080--Hb_135392_010 Hb_004097_080--Hb_000712_070 Hb_039562_010 Hb_039562_010 Hb_004097_080--Hb_039562_010 Hb_004097_080--Hb_003334_080 Hb_004097_080--Hb_001134_040 Hb_135392_010--Hb_007417_020 Hb_007491_010 Hb_007491_010 Hb_135392_010--Hb_007491_010 Hb_001464_010 Hb_001464_010 Hb_135392_010--Hb_001464_010 Hb_003090_070--Hb_004693_010 Hb_000059_100 Hb_000059_100 Hb_003090_070--Hb_000059_100 Hb_003090_070--Hb_007532_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.62948 0.361642 0.404856 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0640811 0.0252068 0 22.0819 0.316106

CAGE analysis