Hb_007491_010

Information

Type -
Description -
Location Contig7491: 11850-13064
Sequence    

Annotation

kegg
ID rcu:RCOM_0418900
description Spotted leaf protein, putative
nr
ID XP_002524055.1
description Spotted leaf protein, putative [Ricinus communis]
swissprot
ID Q9SF15
description E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24 PE=1 SV=1
trembl
ID B9SDI6
description Spotted leaf protein, putative OS=Ricinus communis GN=RCOM_0418900 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase pub24

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56816: 12832-12992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007491_010 0.0 - - Spotted leaf protein, putative [Ricinus communis]
2 Hb_135392_010 0.059241291 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
3 Hb_003237_040 0.0622799427 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
4 Hb_007417_020 0.0698953284 - - Reticuline oxidase precursor, putative [Ricinus communis]
5 Hb_001464_010 0.0871276754 - - PREDICTED: putative receptor-like protein kinase At4g00960 isoform X1 [Populus euphratica]
6 Hb_004448_030 0.1037229677 - - PREDICTED: RING-H2 finger protein ATL40-like [Jatropha curcas]
7 Hb_004097_080 0.1076541387 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
8 Hb_058620_010 0.1119870744 - - cytochrome P450, putative [Ricinus communis]
9 Hb_001134_040 0.1129530302 - - PREDICTED: EG45-like domain containing protein [Jatropha curcas]
10 Hb_005171_060 0.1130521712 - - alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_002173_080 0.1150195044 - - alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_039562_010 0.1163144255 - - PREDICTED: protein SRG1-like [Jatropha curcas]
13 Hb_000679_070 0.1167409219 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
14 Hb_058620_040 0.1179752522 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
15 Hb_000155_140 0.1186330784 - - o-methyltransferase, putative [Ricinus communis]
16 Hb_000229_080 0.1186625855 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
17 Hb_000712_060 0.1202652848 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
18 Hb_003090_070 0.1228737948 - - PREDICTED: laccase-7 [Jatropha curcas]
19 Hb_000127_250 0.1243958242 - - Alliin lyase precursor, putative [Ricinus communis]
20 Hb_000141_070 0.1253589447 - - l-lactate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007491_010 Hb_007491_010 Hb_135392_010 Hb_135392_010 Hb_007491_010--Hb_135392_010 Hb_003237_040 Hb_003237_040 Hb_007491_010--Hb_003237_040 Hb_007417_020 Hb_007417_020 Hb_007491_010--Hb_007417_020 Hb_001464_010 Hb_001464_010 Hb_007491_010--Hb_001464_010 Hb_004448_030 Hb_004448_030 Hb_007491_010--Hb_004448_030 Hb_004097_080 Hb_004097_080 Hb_007491_010--Hb_004097_080 Hb_135392_010--Hb_007417_020 Hb_001134_040 Hb_001134_040 Hb_135392_010--Hb_001134_040 Hb_058620_010 Hb_058620_010 Hb_135392_010--Hb_058620_010 Hb_135392_010--Hb_001464_010 Hb_135392_010--Hb_004097_080 Hb_000127_250 Hb_000127_250 Hb_003237_040--Hb_000127_250 Hb_058620_040 Hb_058620_040 Hb_003237_040--Hb_058620_040 Hb_003237_040--Hb_135392_010 Hb_003237_040--Hb_007417_020 Hb_058620_050 Hb_058620_050 Hb_003237_040--Hb_058620_050 Hb_007417_020--Hb_001464_010 Hb_007417_020--Hb_001134_040 Hb_003090_070 Hb_003090_070 Hb_007417_020--Hb_003090_070 Hb_002805_230 Hb_002805_230 Hb_007417_020--Hb_002805_230 Hb_001464_010--Hb_001134_040 Hb_004055_180 Hb_004055_180 Hb_001464_010--Hb_004055_180 Hb_097908_010 Hb_097908_010 Hb_001464_010--Hb_097908_010 Hb_004448_030--Hb_135392_010 Hb_000120_700 Hb_000120_700 Hb_004448_030--Hb_000120_700 Hb_004448_030--Hb_007417_020 Hb_021419_060 Hb_021419_060 Hb_004448_030--Hb_021419_060 Hb_004448_030--Hb_001464_010 Hb_004097_080--Hb_058620_010 Hb_000712_070 Hb_000712_070 Hb_004097_080--Hb_000712_070 Hb_039562_010 Hb_039562_010 Hb_004097_080--Hb_039562_010 Hb_003334_080 Hb_003334_080 Hb_004097_080--Hb_003334_080 Hb_004097_080--Hb_001134_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0756253 0.238075 0.0265492 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.13278 0.195356

CAGE analysis