Hb_021419_060

Information

Type -
Description -
Location Contig21419: 45293-48865
Sequence    

Annotation

kegg
ID tcc:TCM_042545
description LRR receptor-like serine/threonine-protein kinase, putative
nr
ID XP_007009030.1
description LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A061FKI4
description LRR receptor-like serine/threonine-protein kinase, putative OS=Theobroma cacao GN=TCM_042545 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021419_060 0.0 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
2 Hb_011282_070 0.0586095267 - - ATP binding protein, putative [Ricinus communis]
3 Hb_002917_010 0.1089939485 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
4 Hb_004463_040 0.1118097018 - - -
5 Hb_002048_010 0.1141071178 - - unknown [Lotus japonicus]
6 Hb_020332_040 0.1201282578 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
7 Hb_064398_010 0.1204608103 - - cytochrome P450, putative [Ricinus communis]
8 Hb_000487_170 0.121100563 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
9 Hb_004448_030 0.1230475837 - - PREDICTED: RING-H2 finger protein ATL40-like [Jatropha curcas]
10 Hb_000411_060 0.1231584884 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
11 Hb_000189_260 0.1243218595 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001288_010 0.1251099957 - - -
13 Hb_012660_010 0.128761652 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
14 Hb_115007_010 0.1317654332 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
15 Hb_009012_020 0.1325409618 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
16 Hb_001357_260 0.1343706924 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_002965_020 0.1345800444 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
18 Hb_007342_020 0.135194677 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
19 Hb_000976_020 0.1379273626 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
20 Hb_000483_020 0.1403406121 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_021419_060 Hb_021419_060 Hb_011282_070 Hb_011282_070 Hb_021419_060--Hb_011282_070 Hb_002917_010 Hb_002917_010 Hb_021419_060--Hb_002917_010 Hb_004463_040 Hb_004463_040 Hb_021419_060--Hb_004463_040 Hb_002048_010 Hb_002048_010 Hb_021419_060--Hb_002048_010 Hb_020332_040 Hb_020332_040 Hb_021419_060--Hb_020332_040 Hb_064398_010 Hb_064398_010 Hb_021419_060--Hb_064398_010 Hb_011282_070--Hb_004463_040 Hb_011282_070--Hb_002048_010 Hb_011282_070--Hb_020332_040 Hb_000422_020 Hb_000422_020 Hb_011282_070--Hb_000422_020 Hb_000683_010 Hb_000683_010 Hb_011282_070--Hb_000683_010 Hb_001357_260 Hb_001357_260 Hb_002917_010--Hb_001357_260 Hb_000189_260 Hb_000189_260 Hb_002917_010--Hb_000189_260 Hb_000976_020 Hb_000976_020 Hb_002917_010--Hb_000976_020 Hb_002965_020 Hb_002965_020 Hb_002917_010--Hb_002965_020 Hb_146023_010 Hb_146023_010 Hb_002917_010--Hb_146023_010 Hb_002917_010--Hb_064398_010 Hb_003900_050 Hb_003900_050 Hb_004463_040--Hb_003900_050 Hb_004200_040 Hb_004200_040 Hb_004463_040--Hb_004200_040 Hb_004463_040--Hb_000976_020 Hb_009012_020 Hb_009012_020 Hb_004463_040--Hb_009012_020 Hb_004463_040--Hb_020332_040 Hb_004463_040--Hb_002048_010 Hb_002048_010--Hb_020332_040 Hb_012796_050 Hb_012796_050 Hb_002048_010--Hb_012796_050 Hb_002048_010--Hb_002965_020 Hb_002048_010--Hb_000976_020 Hb_002048_010--Hb_000189_260 Hb_012660_010 Hb_012660_010 Hb_020332_040--Hb_012660_010 Hb_020332_040--Hb_000189_260 Hb_011486_030 Hb_011486_030 Hb_020332_040--Hb_011486_030 Hb_027141_010 Hb_027141_010 Hb_020332_040--Hb_027141_010 Hb_020332_040--Hb_000976_020 Hb_010712_020 Hb_010712_020 Hb_064398_010--Hb_010712_020 Hb_001863_290 Hb_001863_290 Hb_064398_010--Hb_001863_290 Hb_001442_080 Hb_001442_080 Hb_064398_010--Hb_001442_080 Hb_000487_170 Hb_000487_170 Hb_064398_010--Hb_000487_170 Hb_001141_170 Hb_001141_170 Hb_064398_010--Hb_001141_170 Hb_107258_010 Hb_107258_010 Hb_064398_010--Hb_107258_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0362892 0.008803 0.00418723 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.319701 0.0215546

CAGE analysis