Hb_004463_040

Information

Type -
Description -
Location Contig4463: 52259-53006
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004463_040 0.0 - - -
2 Hb_003900_050 0.0719916504 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
3 Hb_004200_040 0.0797975411 - - laccase, putative [Ricinus communis]
4 Hb_000976_020 0.0902362207 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
5 Hb_009012_020 0.0912240168 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
6 Hb_020332_040 0.0916698929 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
7 Hb_002048_010 0.0933427565 - - unknown [Lotus japonicus]
8 Hb_110218_010 0.0939798133 - - PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
9 Hb_000684_020 0.0945670332 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
10 Hb_000140_260 0.0959206062 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
11 Hb_027141_010 0.0993507126 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_011282_070 0.1104397685 - - ATP binding protein, putative [Ricinus communis]
13 Hb_021419_060 0.1118097018 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
14 Hb_000205_210 0.1129793401 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
15 Hb_076895_020 0.1135475194 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
16 Hb_000189_260 0.1153428215 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002965_020 0.1178784664 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
18 Hb_000411_060 0.1183275768 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
19 Hb_004190_010 0.1184910901 - - unnamed protein product [Vitis vinifera]
20 Hb_012660_010 0.1185590879 - - hypothetical protein JCGZ_25971 [Jatropha curcas]

Gene co-expression network

sample Hb_004463_040 Hb_004463_040 Hb_003900_050 Hb_003900_050 Hb_004463_040--Hb_003900_050 Hb_004200_040 Hb_004200_040 Hb_004463_040--Hb_004200_040 Hb_000976_020 Hb_000976_020 Hb_004463_040--Hb_000976_020 Hb_009012_020 Hb_009012_020 Hb_004463_040--Hb_009012_020 Hb_020332_040 Hb_020332_040 Hb_004463_040--Hb_020332_040 Hb_002048_010 Hb_002048_010 Hb_004463_040--Hb_002048_010 Hb_003900_050--Hb_004200_040 Hb_000205_210 Hb_000205_210 Hb_003900_050--Hb_000205_210 Hb_000140_260 Hb_000140_260 Hb_003900_050--Hb_000140_260 Hb_004881_060 Hb_004881_060 Hb_003900_050--Hb_004881_060 Hb_000684_020 Hb_000684_020 Hb_003900_050--Hb_000684_020 Hb_004200_040--Hb_000140_260 Hb_004200_040--Hb_000205_210 Hb_027141_010 Hb_027141_010 Hb_004200_040--Hb_027141_010 Hb_004200_040--Hb_000684_020 Hb_008225_080 Hb_008225_080 Hb_000976_020--Hb_008225_080 Hb_000758_030 Hb_000758_030 Hb_000976_020--Hb_000758_030 Hb_001357_260 Hb_001357_260 Hb_000976_020--Hb_001357_260 Hb_000189_260 Hb_000189_260 Hb_000976_020--Hb_000189_260 Hb_002965_020 Hb_002965_020 Hb_000976_020--Hb_002965_020 Hb_000976_020--Hb_020332_040 Hb_001902_180 Hb_001902_180 Hb_009012_020--Hb_001902_180 Hb_000046_060 Hb_000046_060 Hb_009012_020--Hb_000046_060 Hb_110218_010 Hb_110218_010 Hb_009012_020--Hb_110218_010 Hb_009012_020--Hb_000684_020 Hb_000411_060 Hb_000411_060 Hb_009012_020--Hb_000411_060 Hb_012660_010 Hb_012660_010 Hb_020332_040--Hb_012660_010 Hb_020332_040--Hb_000189_260 Hb_020332_040--Hb_002048_010 Hb_011486_030 Hb_011486_030 Hb_020332_040--Hb_011486_030 Hb_020332_040--Hb_027141_010 Hb_012796_050 Hb_012796_050 Hb_002048_010--Hb_012796_050 Hb_002048_010--Hb_002965_020 Hb_002048_010--Hb_000976_020 Hb_002048_010--Hb_000189_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.460023 0.0822163 0.132731 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.36208 0.185543

CAGE analysis