Hb_020332_040

Information

Type -
Description -
Location Contig20332: 36893-39384
Sequence    

Annotation

kegg
ID egr:104449633
description alcohol dehydrogenase
nr
ID XP_012066087.1
description PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
swissprot
ID P04707
description Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 SV=1
trembl
ID A0A067LEW1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25241 PE=3 SV=1
Gene Ontology
ID GO:0004022
description alcohol dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20842: 36852-39329 , PASA_asmbl_20843: 36852-39329
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020332_040 0.0 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
2 Hb_012660_010 0.0574012637 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
3 Hb_000189_260 0.0683610002 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002048_010 0.0739978555 - - unknown [Lotus japonicus]
5 Hb_011486_030 0.0750727439 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
6 Hb_027141_010 0.0772044357 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_000976_020 0.0883071364 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
8 Hb_004463_040 0.0916698929 - - -
9 Hb_001288_010 0.0971372162 - - -
10 Hb_002965_020 0.0989961132 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
11 Hb_000140_260 0.1003473224 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
12 Hb_000648_120 0.1036973201 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
13 Hb_107258_010 0.1061912195 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
14 Hb_000281_200 0.1081556423 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
15 Hb_076895_020 0.1083072467 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
16 Hb_000301_030 0.1100138516 - - PREDICTED: pectate lyase-like [Jatropha curcas]
17 Hb_002917_010 0.11015106 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
18 Hb_000438_190 0.1136010116 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
19 Hb_004200_040 0.1137108668 - - laccase, putative [Ricinus communis]
20 Hb_000245_140 0.1155740559 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]

Gene co-expression network

sample Hb_020332_040 Hb_020332_040 Hb_012660_010 Hb_012660_010 Hb_020332_040--Hb_012660_010 Hb_000189_260 Hb_000189_260 Hb_020332_040--Hb_000189_260 Hb_002048_010 Hb_002048_010 Hb_020332_040--Hb_002048_010 Hb_011486_030 Hb_011486_030 Hb_020332_040--Hb_011486_030 Hb_027141_010 Hb_027141_010 Hb_020332_040--Hb_027141_010 Hb_000976_020 Hb_000976_020 Hb_020332_040--Hb_000976_020 Hb_107258_010 Hb_107258_010 Hb_012660_010--Hb_107258_010 Hb_012660_010--Hb_011486_030 Hb_001288_010 Hb_001288_010 Hb_012660_010--Hb_001288_010 Hb_001863_290 Hb_001863_290 Hb_012660_010--Hb_001863_290 Hb_000301_030 Hb_000301_030 Hb_012660_010--Hb_000301_030 Hb_002917_010 Hb_002917_010 Hb_000189_260--Hb_002917_010 Hb_000189_260--Hb_000976_020 Hb_000189_260--Hb_012660_010 Hb_001357_260 Hb_001357_260 Hb_000189_260--Hb_001357_260 Hb_000189_260--Hb_002048_010 Hb_012796_050 Hb_012796_050 Hb_002048_010--Hb_012796_050 Hb_002965_020 Hb_002965_020 Hb_002048_010--Hb_002965_020 Hb_004463_040 Hb_004463_040 Hb_002048_010--Hb_004463_040 Hb_002048_010--Hb_000976_020 Hb_011486_030--Hb_027141_010 Hb_011486_030--Hb_000301_030 Hb_000076_200 Hb_000076_200 Hb_011486_030--Hb_000076_200 Hb_011486_030--Hb_001288_010 Hb_000140_260 Hb_000140_260 Hb_027141_010--Hb_000140_260 Hb_076895_020 Hb_076895_020 Hb_027141_010--Hb_076895_020 Hb_004200_040 Hb_004200_040 Hb_027141_010--Hb_004200_040 Hb_000539_080 Hb_000539_080 Hb_027141_010--Hb_000539_080 Hb_000205_210 Hb_000205_210 Hb_027141_010--Hb_000205_210 Hb_008225_080 Hb_008225_080 Hb_000976_020--Hb_008225_080 Hb_000758_030 Hb_000758_030 Hb_000976_020--Hb_000758_030 Hb_000976_020--Hb_001357_260 Hb_000976_020--Hb_002965_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153951 16.2567 2.8607 8.59683 0.0144202 0.0606679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.386203 0.110479 0 130.859 6.32746

CAGE analysis