Hb_012796_050

Information

Type rubber biosynthesis
Description Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase
Location Contig12796: 60163-63606
Sequence    

Annotation

kegg
ID rcu:RCOM_0025610
description 1-deoxyxylulose-5-phosphate synthase, putative (EC:2.2.1.7)
nr
ID XP_002533688.1
description 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
swissprot
ID Q6YU51
description Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0190000 PE=2 SV=1
trembl
ID B9T619
description 1-deoxyxylulose-5-phosphate synthase, putative OS=Ricinus communis GN=RCOM_0025610 PE=3 SV=1
Gene Ontology
ID GO:0008661
description probable 1-deoxy-d-xylulose-5-phosphate synthase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08620: 60223-62214 , PASA_asmbl_08621: 62646-63524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012796_050 0.0 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
2 Hb_148914_010 0.0636740525 - - glutathione s-transferase, putative [Ricinus communis]
3 Hb_002048_010 0.0818716713 - - unknown [Lotus japonicus]
4 Hb_002232_370 0.0958365071 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
5 Hb_000438_190 0.0972835764 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
6 Hb_004712_080 0.1023673929 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
7 Hb_033363_080 0.1026080749 - - Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]
8 Hb_000245_140 0.105530015 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
9 Hb_004774_060 0.1095955312 - - -
10 Hb_002965_020 0.1103140206 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
11 Hb_000563_610 0.1116004794 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
12 Hb_175968_010 0.1183234936 - - hypothetical protein JCGZ_21281 [Jatropha curcas]
13 Hb_004055_180 0.1185446787 - - cell wall invertase [Manihot esculenta]
14 Hb_011145_020 0.1243432407 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
15 Hb_010407_120 0.1256301171 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]
16 Hb_020332_040 0.126169439 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
17 Hb_001454_300 0.1339383353 - - nucleotide binding protein, putative [Ricinus communis]
18 Hb_004195_240 0.1342598021 - - Peroxidase 72 precursor, putative [Ricinus communis]
19 Hb_025469_040 0.134510469 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
20 Hb_001279_220 0.1360038507 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_012796_050 Hb_012796_050 Hb_148914_010 Hb_148914_010 Hb_012796_050--Hb_148914_010 Hb_002048_010 Hb_002048_010 Hb_012796_050--Hb_002048_010 Hb_002232_370 Hb_002232_370 Hb_012796_050--Hb_002232_370 Hb_000438_190 Hb_000438_190 Hb_012796_050--Hb_000438_190 Hb_004712_080 Hb_004712_080 Hb_012796_050--Hb_004712_080 Hb_033363_080 Hb_033363_080 Hb_012796_050--Hb_033363_080 Hb_148914_010--Hb_000438_190 Hb_148914_010--Hb_002232_370 Hb_000245_140 Hb_000245_140 Hb_148914_010--Hb_000245_140 Hb_002965_020 Hb_002965_020 Hb_148914_010--Hb_002965_020 Hb_010407_120 Hb_010407_120 Hb_148914_010--Hb_010407_120 Hb_020332_040 Hb_020332_040 Hb_002048_010--Hb_020332_040 Hb_002048_010--Hb_002965_020 Hb_004463_040 Hb_004463_040 Hb_002048_010--Hb_004463_040 Hb_000976_020 Hb_000976_020 Hb_002048_010--Hb_000976_020 Hb_000189_260 Hb_000189_260 Hb_002048_010--Hb_000189_260 Hb_002232_370--Hb_000245_140 Hb_002232_370--Hb_000438_190 Hb_002232_370--Hb_002965_020 Hb_002232_400 Hb_002232_400 Hb_002232_370--Hb_002232_400 Hb_004544_070 Hb_004544_070 Hb_000438_190--Hb_004544_070 Hb_002749_070 Hb_002749_070 Hb_000438_190--Hb_002749_070 Hb_011145_020 Hb_011145_020 Hb_000438_190--Hb_011145_020 Hb_000438_190--Hb_010407_120 Hb_175968_010 Hb_175968_010 Hb_004712_080--Hb_175968_010 Hb_001279_220 Hb_001279_220 Hb_004712_080--Hb_001279_220 Hb_004712_080--Hb_033363_080 Hb_001454_300 Hb_001454_300 Hb_004712_080--Hb_001454_300 Hb_004774_060 Hb_004774_060 Hb_004712_080--Hb_004774_060 Hb_033363_080--Hb_004774_060 Hb_033363_080--Hb_011145_020 Hb_033363_080--Hb_175968_010 Hb_033363_080--Hb_000438_190 Hb_004055_180 Hb_004055_180 Hb_033363_080--Hb_004055_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.513908 0.508915 0.406583 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0487893 0.025595 0 5.69379 0.299726

CAGE analysis