Hb_002749_070

Information

Type -
Description -
Location Contig2749: 52232-57140
Sequence    

Annotation

kegg
ID rcu:RCOM_0106420
description hypothetical protein
nr
ID XP_012074471.1
description PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LC94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13473 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28793: 53455-53850 , PASA_asmbl_28794: 54767-55006
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002749_070 0.0 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
2 Hb_004544_070 0.0529850855 - - unnamed protein product [Vitis vinifera]
3 Hb_164283_010 0.0673222429 - - hypothetical protein RCOM_0725500 [Ricinus communis]
4 Hb_011145_020 0.0749537935 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
5 Hb_000025_740 0.0776267862 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
6 Hb_018591_010 0.0818464276 - - kinase, putative [Ricinus communis]
7 Hb_000438_190 0.0859413262 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
8 Hb_006637_040 0.0955237775 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
9 Hb_000934_170 0.0974338351 - - alcohol dehydrogenase, putative [Ricinus communis]
10 Hb_002232_400 0.0987071938 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
11 Hb_008418_010 0.1108653649 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
12 Hb_001758_120 0.1112565021 - - unnamed protein product [Vitis vinifera]
13 Hb_000580_070 0.1131829416 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
14 Hb_000589_100 0.1154162343 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
15 Hb_000347_530 0.1178270094 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
16 Hb_001922_010 0.1199242576 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
17 Hb_148914_010 0.1206261012 - - glutathione s-transferase, putative [Ricinus communis]
18 Hb_003205_030 0.1229628362 - - Pectinesterase inhibitor, putative [Ricinus communis]
19 Hb_001691_060 0.1245790641 - - lipoxygenase, putative [Ricinus communis]
20 Hb_033363_080 0.1263543358 - - Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002749_070 Hb_002749_070 Hb_004544_070 Hb_004544_070 Hb_002749_070--Hb_004544_070 Hb_164283_010 Hb_164283_010 Hb_002749_070--Hb_164283_010 Hb_011145_020 Hb_011145_020 Hb_002749_070--Hb_011145_020 Hb_000025_740 Hb_000025_740 Hb_002749_070--Hb_000025_740 Hb_018591_010 Hb_018591_010 Hb_002749_070--Hb_018591_010 Hb_000438_190 Hb_000438_190 Hb_002749_070--Hb_000438_190 Hb_004544_070--Hb_164283_010 Hb_004544_070--Hb_018591_010 Hb_004544_070--Hb_000438_190 Hb_004544_070--Hb_011145_020 Hb_006637_040 Hb_006637_040 Hb_004544_070--Hb_006637_040 Hb_164283_010--Hb_018591_010 Hb_008418_010 Hb_008418_010 Hb_164283_010--Hb_008418_010 Hb_164283_010--Hb_006637_040 Hb_164283_010--Hb_011145_020 Hb_033363_080 Hb_033363_080 Hb_011145_020--Hb_033363_080 Hb_001691_060 Hb_001691_060 Hb_011145_020--Hb_001691_060 Hb_011145_020--Hb_018591_010 Hb_010334_040 Hb_010334_040 Hb_000025_740--Hb_010334_040 Hb_000005_350 Hb_000005_350 Hb_000025_740--Hb_000005_350 Hb_001104_210 Hb_001104_210 Hb_000025_740--Hb_001104_210 Hb_000025_740--Hb_004544_070 Hb_000025_740--Hb_164283_010 Hb_018591_010--Hb_008418_010 Hb_018591_010--Hb_006637_040 Hb_148914_010 Hb_148914_010 Hb_000438_190--Hb_148914_010 Hb_002232_370 Hb_002232_370 Hb_000438_190--Hb_002232_370 Hb_000438_190--Hb_011145_020 Hb_010407_120 Hb_010407_120 Hb_000438_190--Hb_010407_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0838737 1.60275 1.80382 3.55433 0.0153351 0.0148984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0146336 0 17.9044 0.96321

CAGE analysis