Hb_001104_210

Information

Type -
Description -
Location Contig1104: 269522-270997
Sequence    

Annotation

kegg
ID rcu:RCOM_0383350
description ATP binding protein, putative
nr
ID KDP42680.1
description hypothetical protein JCGZ_23620 [Jatropha curcas]
swissprot
ID Q9LZR8
description PAN domain-containing protein At5g03700 OS=Arabidopsis thaliana GN=At5g03700 PE=1 SV=1
trembl
ID A0A067LDW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23620 PE=4 SV=1
Gene Ontology
ID GO:0048544
description pan domain-containing protein at5g03700

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_210 0.0 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
2 Hb_001136_030 0.0637730112 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
3 Hb_003090_180 0.0649604916 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
4 Hb_001377_010 0.0757908801 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
5 Hb_004881_060 0.0857294634 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
6 Hb_000025_740 0.0907647588 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
7 Hb_002870_010 0.0911467643 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
8 Hb_000487_240 0.0943623986 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
9 Hb_000205_210 0.1124536768 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
10 Hb_005211_090 0.1203616083 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
11 Hb_000276_030 0.1229147792 - - dimethylaniline monooxygenase, putative [Ricinus communis]
12 Hb_012807_140 0.1235616504 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
13 Hb_004544_070 0.1240924138 - - unnamed protein product [Vitis vinifera]
14 Hb_010334_040 0.1261527532 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
15 Hb_032050_050 0.1265138158 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
16 Hb_000580_070 0.1271398103 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
17 Hb_002749_070 0.1278210711 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
18 Hb_027141_010 0.1286603337 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_000911_050 0.1312991265 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
20 Hb_001514_070 0.1317221991 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_001104_210 Hb_001104_210 Hb_001136_030 Hb_001136_030 Hb_001104_210--Hb_001136_030 Hb_003090_180 Hb_003090_180 Hb_001104_210--Hb_003090_180 Hb_001377_010 Hb_001377_010 Hb_001104_210--Hb_001377_010 Hb_004881_060 Hb_004881_060 Hb_001104_210--Hb_004881_060 Hb_000025_740 Hb_000025_740 Hb_001104_210--Hb_000025_740 Hb_002870_010 Hb_002870_010 Hb_001104_210--Hb_002870_010 Hb_001136_030--Hb_001377_010 Hb_001136_030--Hb_002870_010 Hb_001136_030--Hb_003090_180 Hb_001136_030--Hb_004881_060 Hb_000911_050 Hb_000911_050 Hb_001136_030--Hb_000911_050 Hb_003090_180--Hb_004881_060 Hb_000487_240 Hb_000487_240 Hb_003090_180--Hb_000487_240 Hb_003090_180--Hb_000025_740 Hb_003090_180--Hb_002870_010 Hb_001377_010--Hb_002870_010 Hb_001377_010--Hb_000911_050 Hb_001514_070 Hb_001514_070 Hb_001377_010--Hb_001514_070 Hb_001377_010--Hb_003090_180 Hb_003900_050 Hb_003900_050 Hb_004881_060--Hb_003900_050 Hb_000205_210 Hb_000205_210 Hb_004881_060--Hb_000205_210 Hb_056101_010 Hb_056101_010 Hb_004881_060--Hb_056101_010 Hb_001105_200 Hb_001105_200 Hb_004881_060--Hb_001105_200 Hb_002749_070 Hb_002749_070 Hb_000025_740--Hb_002749_070 Hb_010334_040 Hb_010334_040 Hb_000025_740--Hb_010334_040 Hb_000005_350 Hb_000005_350 Hb_000025_740--Hb_000005_350 Hb_004544_070 Hb_004544_070 Hb_000025_740--Hb_004544_070 Hb_164283_010 Hb_164283_010 Hb_000025_740--Hb_164283_010 Hb_002870_010--Hb_001514_070 Hb_012807_140 Hb_012807_140 Hb_002870_010--Hb_012807_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.844853 0.333062 0.967802 0.0139911 0.0140302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.95654 0.627929

CAGE analysis