Hb_001105_200

Information

Type -
Description -
Location Contig1105: 150226-152940
Sequence    

Annotation

kegg
ID rcu:RCOM_1342600
description catalytic, putative
nr
ID XP_002515158.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q09893
description Uncharacterized protein C24B11.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.05 PE=3 SV=1
trembl
ID B9RN19
description Catalytic, putative OS=Ricinus communis GN=RCOM_1342600 PE=4 SV=1
Gene Ontology
ID GO:0016787
description haloacid dehalogenase-like hydrolase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03311: 151179-152193
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001105_200 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_004712_020 0.0716945548 - - hypothetical protein JCGZ_00782 [Jatropha curcas]
3 Hb_012807_140 0.0865379069 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
4 Hb_009642_010 0.0909536225 - - Disease resistance protein RFL1, putative [Ricinus communis]
5 Hb_002122_040 0.0938064541 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_000205_210 0.0977047017 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
7 Hb_004881_060 0.104126727 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
8 Hb_088916_010 0.1121634477 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
9 Hb_008692_020 0.1137616719 - - -
10 Hb_010926_030 0.1159247605 - - hypothetical protein CISIN_1g037967mg, partial [Citrus sinensis]
11 Hb_001158_080 0.1259353518 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
12 Hb_000487_240 0.1277374746 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
13 Hb_009510_060 0.1307035505 - - -
14 Hb_004200_040 0.130769833 - - laccase, putative [Ricinus communis]
15 Hb_000081_020 0.1342044592 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
16 Hb_003399_030 0.1347730588 - - PREDICTED: isoflavone 2'-hydroxylase-like [Jatropha curcas]
17 Hb_003090_180 0.1349173515 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
18 Hb_001104_210 0.1351005728 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
19 Hb_001136_030 0.1360431704 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
20 Hb_002182_050 0.1365282853 - - hypothetical protein CICLE_v10022654mg [Citrus clementina]

Gene co-expression network

sample Hb_001105_200 Hb_001105_200 Hb_004712_020 Hb_004712_020 Hb_001105_200--Hb_004712_020 Hb_012807_140 Hb_012807_140 Hb_001105_200--Hb_012807_140 Hb_009642_010 Hb_009642_010 Hb_001105_200--Hb_009642_010 Hb_002122_040 Hb_002122_040 Hb_001105_200--Hb_002122_040 Hb_000205_210 Hb_000205_210 Hb_001105_200--Hb_000205_210 Hb_004881_060 Hb_004881_060 Hb_001105_200--Hb_004881_060 Hb_004712_020--Hb_012807_140 Hb_010926_030 Hb_010926_030 Hb_004712_020--Hb_010926_030 Hb_004712_020--Hb_002122_040 Hb_008692_020 Hb_008692_020 Hb_004712_020--Hb_008692_020 Hb_002870_010 Hb_002870_010 Hb_004712_020--Hb_002870_010 Hb_012807_140--Hb_002870_010 Hb_012807_140--Hb_002122_040 Hb_000487_240 Hb_000487_240 Hb_012807_140--Hb_000487_240 Hb_012807_140--Hb_009642_010 Hb_009642_010--Hb_002122_040 Hb_001158_080 Hb_001158_080 Hb_009642_010--Hb_001158_080 Hb_009642_010--Hb_004712_020 Hb_088916_010 Hb_088916_010 Hb_009642_010--Hb_088916_010 Hb_002122_040--Hb_008692_020 Hb_002122_040--Hb_002870_010 Hb_004200_040 Hb_004200_040 Hb_000205_210--Hb_004200_040 Hb_000140_260 Hb_000140_260 Hb_000205_210--Hb_000140_260 Hb_003900_050 Hb_003900_050 Hb_000205_210--Hb_003900_050 Hb_027141_010 Hb_027141_010 Hb_000205_210--Hb_027141_010 Hb_000984_080 Hb_000984_080 Hb_000205_210--Hb_000984_080 Hb_003090_180 Hb_003090_180 Hb_004881_060--Hb_003090_180 Hb_001104_210 Hb_001104_210 Hb_004881_060--Hb_001104_210 Hb_004881_060--Hb_003900_050 Hb_004881_060--Hb_000205_210 Hb_056101_010 Hb_056101_010 Hb_004881_060--Hb_056101_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.223667 15.8877 0.806845 13.3198 0.0385015 0.248208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.244026 0.071994 0.135367 56.8455 7.93912

CAGE analysis