Hb_010926_030

Information

Type -
Description -
Location Contig10926: 55366-57923
Sequence    

Annotation

kegg
ID osa:4343660
description Os07g0570500
nr
ID KDO40668.1
description hypothetical protein CISIN_1g037967mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DCY9
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g037967mg PE=4 SV=1
Gene Ontology
ID GO:0004222
description zinc- peroxisomal-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02811: 55378-55578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010926_030 0.0 - - hypothetical protein CISIN_1g037967mg, partial [Citrus sinensis]
2 Hb_009510_060 0.0241475053 - - -
3 Hb_000149_090 0.0777200418 - - -
4 Hb_004712_020 0.1011510384 - - hypothetical protein JCGZ_00782 [Jatropha curcas]
5 Hb_012807_140 0.1115583178 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
6 Hb_001105_200 0.1159247605 - - catalytic, putative [Ricinus communis]
7 Hb_002122_040 0.1242385364 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_000608_450 0.1269500875 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
9 Hb_009642_010 0.1353290083 - - Disease resistance protein RFL1, putative [Ricinus communis]
10 Hb_008692_020 0.1418285272 - - -
11 Hb_000844_100 0.1437746574 - - hypothetical protein JCGZ_04351 [Jatropha curcas]
12 Hb_064482_010 0.1457926773 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_121441_010 0.1539975006 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_088916_010 0.1540917642 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
15 Hb_000205_210 0.1611837094 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
16 Hb_008140_060 0.1627367815 - - Cytochrome P450, putative [Theobroma cacao]
17 Hb_002870_010 0.1645176253 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
18 Hb_000740_130 0.1657562507 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
19 Hb_132515_010 0.1673487321 - - phosphoprotein phosphatase, putative [Ricinus communis]
20 Hb_001863_080 0.1690524882 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]

Gene co-expression network

sample Hb_010926_030 Hb_010926_030 Hb_009510_060 Hb_009510_060 Hb_010926_030--Hb_009510_060 Hb_000149_090 Hb_000149_090 Hb_010926_030--Hb_000149_090 Hb_004712_020 Hb_004712_020 Hb_010926_030--Hb_004712_020 Hb_012807_140 Hb_012807_140 Hb_010926_030--Hb_012807_140 Hb_001105_200 Hb_001105_200 Hb_010926_030--Hb_001105_200 Hb_002122_040 Hb_002122_040 Hb_010926_030--Hb_002122_040 Hb_009510_060--Hb_000149_090 Hb_009510_060--Hb_004712_020 Hb_009510_060--Hb_012807_140 Hb_064482_010 Hb_064482_010 Hb_009510_060--Hb_064482_010 Hb_009510_060--Hb_002122_040 Hb_121441_010 Hb_121441_010 Hb_000149_090--Hb_121441_010 Hb_000644_040 Hb_000644_040 Hb_000149_090--Hb_000644_040 Hb_002566_010 Hb_002566_010 Hb_000149_090--Hb_002566_010 Hb_008692_020 Hb_008692_020 Hb_000149_090--Hb_008692_020 Hb_004712_020--Hb_012807_140 Hb_004712_020--Hb_001105_200 Hb_004712_020--Hb_002122_040 Hb_004712_020--Hb_008692_020 Hb_002870_010 Hb_002870_010 Hb_004712_020--Hb_002870_010 Hb_012807_140--Hb_001105_200 Hb_012807_140--Hb_002870_010 Hb_012807_140--Hb_002122_040 Hb_000487_240 Hb_000487_240 Hb_012807_140--Hb_000487_240 Hb_009642_010 Hb_009642_010 Hb_012807_140--Hb_009642_010 Hb_001105_200--Hb_009642_010 Hb_001105_200--Hb_002122_040 Hb_000205_210 Hb_000205_210 Hb_001105_200--Hb_000205_210 Hb_004881_060 Hb_004881_060 Hb_001105_200--Hb_004881_060 Hb_002122_040--Hb_009642_010 Hb_002122_040--Hb_008692_020 Hb_002122_040--Hb_002870_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.376655 0 0.294208 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.07504 0.241645

CAGE analysis