Hb_002870_010

Information

Type -
Description -
Location Contig2870: 6645-7016
Sequence    

Annotation

kegg
ID rcu:RCOM_0904870
description hypothetical protein
nr
ID XP_012091351.1
description PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RXL9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0904870 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002870_010 0.0 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
2 Hb_001377_010 0.0656064847 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
3 Hb_001514_070 0.0820821337 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_001136_030 0.0881267338 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
5 Hb_001104_210 0.0911467643 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
6 Hb_012807_140 0.0939125197 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
7 Hb_003090_180 0.1025098077 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
8 Hb_000487_240 0.1054479716 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
9 Hb_004712_020 0.1059643408 - - hypothetical protein JCGZ_00782 [Jatropha curcas]
10 Hb_005211_090 0.1104636825 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
11 Hb_000393_030 0.1111341457 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_008692_020 0.1113246444 - - -
13 Hb_004881_060 0.1167553068 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
14 Hb_000911_050 0.1221823259 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
15 Hb_002122_040 0.1233445006 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_000276_030 0.1260225434 - - dimethylaniline monooxygenase, putative [Ricinus communis]
17 Hb_010761_030 0.1267436115 - - cytochrome P450, putative [Ricinus communis]
18 Hb_002490_090 0.1300906906 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
19 Hb_150084_010 0.1323121601 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
20 Hb_000025_740 0.1345429297 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002870_010 Hb_002870_010 Hb_001377_010 Hb_001377_010 Hb_002870_010--Hb_001377_010 Hb_001514_070 Hb_001514_070 Hb_002870_010--Hb_001514_070 Hb_001136_030 Hb_001136_030 Hb_002870_010--Hb_001136_030 Hb_001104_210 Hb_001104_210 Hb_002870_010--Hb_001104_210 Hb_012807_140 Hb_012807_140 Hb_002870_010--Hb_012807_140 Hb_003090_180 Hb_003090_180 Hb_002870_010--Hb_003090_180 Hb_001377_010--Hb_001136_030 Hb_001377_010--Hb_001104_210 Hb_000911_050 Hb_000911_050 Hb_001377_010--Hb_000911_050 Hb_001377_010--Hb_001514_070 Hb_001377_010--Hb_003090_180 Hb_000393_030 Hb_000393_030 Hb_001514_070--Hb_000393_030 Hb_005211_090 Hb_005211_090 Hb_001514_070--Hb_005211_090 Hb_001470_040 Hb_001470_040 Hb_001514_070--Hb_001470_040 Hb_001329_110 Hb_001329_110 Hb_001514_070--Hb_001329_110 Hb_000963_010 Hb_000963_010 Hb_001514_070--Hb_000963_010 Hb_001136_030--Hb_001104_210 Hb_001136_030--Hb_003090_180 Hb_004881_060 Hb_004881_060 Hb_001136_030--Hb_004881_060 Hb_001136_030--Hb_000911_050 Hb_001104_210--Hb_003090_180 Hb_001104_210--Hb_004881_060 Hb_000025_740 Hb_000025_740 Hb_001104_210--Hb_000025_740 Hb_004712_020 Hb_004712_020 Hb_012807_140--Hb_004712_020 Hb_001105_200 Hb_001105_200 Hb_012807_140--Hb_001105_200 Hb_002122_040 Hb_002122_040 Hb_012807_140--Hb_002122_040 Hb_000487_240 Hb_000487_240 Hb_012807_140--Hb_000487_240 Hb_009642_010 Hb_009642_010 Hb_012807_140--Hb_009642_010 Hb_003090_180--Hb_004881_060 Hb_003090_180--Hb_000487_240 Hb_003090_180--Hb_000025_740
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.949647 0.313331 1.49518 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.80161 0.928156

CAGE analysis