Hb_001470_040

Information

Type -
Description -
Location Contig1470: 94272-95312
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18150g
description POPTRDRAFT_855472; hypothetical protein
nr
ID XP_012081782.1
description PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
swissprot
ID F4IDI6
description Probable BOI-related E3 ubiquitin-protein ligase 2 OS=Arabidopsis thaliana GN=BRG2 PE=1 SV=1
trembl
ID A0A067K3N7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18825 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable boi-related e3 ubiquitin-protein ligase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001470_040 0.0 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
2 Hb_001963_020 0.0828823816 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
3 Hb_000276_030 0.0853678078 - - dimethylaniline monooxygenase, putative [Ricinus communis]
4 Hb_001514_070 0.0991340093 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_007313_010 0.1161131107 - - hypothetical protein JCGZ_23398 [Jatropha curcas]
6 Hb_000963_010 0.1178200837 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
7 Hb_000393_030 0.1182100301 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_001053_110 0.1200766379 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
9 Hb_000003_510 0.1217485123 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
10 Hb_003847_170 0.1233517241 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
11 Hb_000032_560 0.1252790745 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
12 Hb_005211_090 0.1259500054 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
13 Hb_000300_170 0.1282630249 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
14 Hb_003787_060 0.1284172126 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
15 Hb_003734_120 0.1297185756 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
16 Hb_001369_620 0.1340952659 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
17 Hb_003805_080 0.1345098063 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
18 Hb_002333_010 0.1349582882 - - hypothetical protein JCGZ_18834 [Jatropha curcas]
19 Hb_010174_170 0.1359960061 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
20 Hb_118707_020 0.1364897595 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001470_040 Hb_001470_040 Hb_001963_020 Hb_001963_020 Hb_001470_040--Hb_001963_020 Hb_000276_030 Hb_000276_030 Hb_001470_040--Hb_000276_030 Hb_001514_070 Hb_001514_070 Hb_001470_040--Hb_001514_070 Hb_007313_010 Hb_007313_010 Hb_001470_040--Hb_007313_010 Hb_000963_010 Hb_000963_010 Hb_001470_040--Hb_000963_010 Hb_000393_030 Hb_000393_030 Hb_001470_040--Hb_000393_030 Hb_000003_510 Hb_000003_510 Hb_001963_020--Hb_000003_510 Hb_001963_020--Hb_000276_030 Hb_001369_620 Hb_001369_620 Hb_001963_020--Hb_001369_620 Hb_001053_110 Hb_001053_110 Hb_001963_020--Hb_001053_110 Hb_010174_170 Hb_010174_170 Hb_001963_020--Hb_010174_170 Hb_000487_240 Hb_000487_240 Hb_000276_030--Hb_000487_240 Hb_003734_120 Hb_003734_120 Hb_000276_030--Hb_003734_120 Hb_005211_090 Hb_005211_090 Hb_000276_030--Hb_005211_090 Hb_003787_060 Hb_003787_060 Hb_000276_030--Hb_003787_060 Hb_000934_290 Hb_000934_290 Hb_000276_030--Hb_000934_290 Hb_001514_070--Hb_000393_030 Hb_002870_010 Hb_002870_010 Hb_001514_070--Hb_002870_010 Hb_001514_070--Hb_005211_090 Hb_001329_110 Hb_001329_110 Hb_001514_070--Hb_001329_110 Hb_001514_070--Hb_000963_010 Hb_000834_210 Hb_000834_210 Hb_007313_010--Hb_000834_210 Hb_000723_240 Hb_000723_240 Hb_007313_010--Hb_000723_240 Hb_003160_050 Hb_003160_050 Hb_007313_010--Hb_003160_050 Hb_003768_100 Hb_003768_100 Hb_007313_010--Hb_003768_100 Hb_007313_010--Hb_001514_070 Hb_007313_010--Hb_003734_120 Hb_150084_010 Hb_150084_010 Hb_000963_010--Hb_150084_010 Hb_002333_010 Hb_002333_010 Hb_000963_010--Hb_002333_010 Hb_000963_010--Hb_003787_060 Hb_184942_010 Hb_184942_010 Hb_000963_010--Hb_184942_010 Hb_039496_010 Hb_039496_010 Hb_000963_010--Hb_039496_010 Hb_012787_050 Hb_012787_050 Hb_000963_010--Hb_012787_050 Hb_000139_500 Hb_000139_500 Hb_000393_030--Hb_000139_500 Hb_000318_060 Hb_000318_060 Hb_000393_030--Hb_000318_060 Hb_000393_030--Hb_002333_010 Hb_000393_030--Hb_002870_010 Hb_003398_090 Hb_003398_090 Hb_000393_030--Hb_003398_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.103504 2.57027 1.66197 4.68116 0.169842 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0467171 0 10.5185 1.51411

CAGE analysis