Hb_000963_010

Information

Type -
Description -
Location Contig963: 15433-17522
Sequence    

Annotation

kegg
ID rcu:RCOM_0154010
description Aquaporin PIP2.1, putative
nr
ID XP_012064821.1
description PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
swissprot
ID Q9ATM4
description Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1
trembl
ID A0A067L9Y2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05520 PE=3 SV=1
Gene Ontology
ID GO:0016021
description plasma membrane intrinsic protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63819: 15432-17425
cDNA
(Sanger)
(ID:Location)		 001_I10.ab1: 15432-16888 , 046_K22.ab1: 15432-16817 , 046_O11.ab1: 15432-16795

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000963_010 0.0 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
2 Hb_150084_010 0.062117603 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
3 Hb_002333_010 0.065893381 - - hypothetical protein JCGZ_18834 [Jatropha curcas]
4 Hb_003787_060 0.0856984903 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
5 Hb_184942_010 0.0867961209 - - STS14 protein precursor, putative [Ricinus communis]
6 Hb_039496_010 0.0880636542 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
7 Hb_012787_050 0.1035911589 - - PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
8 Hb_001514_070 0.1075482795 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_172633_020 0.1135473335 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Populus euphratica]
10 Hb_003805_080 0.113634605 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
11 Hb_002042_160 0.1147871135 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
12 Hb_003788_010 0.1157023531 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
13 Hb_000934_290 0.115873339 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001470_040 0.1178200837 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
15 Hb_000172_740 0.1212671427 - - HXXXD-type acyl-transferase family protein, putative [Theobroma cacao]
16 Hb_000300_170 0.1223208996 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
17 Hb_002490_090 0.1224274321 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
18 Hb_001329_110 0.1225653864 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
19 Hb_000393_030 0.1227082574 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_005489_120 0.1231529809 - - leucine rich repeat receptor kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000963_010 Hb_000963_010 Hb_150084_010 Hb_150084_010 Hb_000963_010--Hb_150084_010 Hb_002333_010 Hb_002333_010 Hb_000963_010--Hb_002333_010 Hb_003787_060 Hb_003787_060 Hb_000963_010--Hb_003787_060 Hb_184942_010 Hb_184942_010 Hb_000963_010--Hb_184942_010 Hb_039496_010 Hb_039496_010 Hb_000963_010--Hb_039496_010 Hb_012787_050 Hb_012787_050 Hb_000963_010--Hb_012787_050 Hb_150084_010--Hb_002333_010 Hb_150084_010--Hb_184942_010 Hb_000172_740 Hb_000172_740 Hb_150084_010--Hb_000172_740 Hb_172633_020 Hb_172633_020 Hb_150084_010--Hb_172633_020 Hb_002042_160 Hb_002042_160 Hb_150084_010--Hb_002042_160 Hb_002333_010--Hb_012787_050 Hb_001568_010 Hb_001568_010 Hb_002333_010--Hb_001568_010 Hb_000318_060 Hb_000318_060 Hb_002333_010--Hb_000318_060 Hb_005333_120 Hb_005333_120 Hb_002333_010--Hb_005333_120 Hb_003805_080 Hb_003805_080 Hb_003787_060--Hb_003805_080 Hb_003787_060--Hb_039496_010 Hb_188923_010 Hb_188923_010 Hb_003787_060--Hb_188923_010 Hb_000934_290 Hb_000934_290 Hb_003787_060--Hb_000934_290 Hb_003734_120 Hb_003734_120 Hb_003787_060--Hb_003734_120 Hb_184942_010--Hb_172633_020 Hb_001158_080 Hb_001158_080 Hb_184942_010--Hb_001158_080 Hb_002490_090 Hb_002490_090 Hb_184942_010--Hb_002490_090 Hb_184942_010--Hb_002042_160 Hb_039496_010--Hb_003805_080 Hb_039496_010--Hb_000934_290 Hb_028008_030 Hb_028008_030 Hb_039496_010--Hb_028008_030 Hb_003788_010 Hb_003788_010 Hb_039496_010--Hb_003788_010 Hb_006846_030 Hb_006846_030 Hb_012787_050--Hb_006846_030 Hb_000070_070 Hb_000070_070 Hb_012787_050--Hb_000070_070 Hb_023956_010 Hb_023956_010 Hb_012787_050--Hb_023956_010 Hb_003847_050 Hb_003847_050 Hb_012787_050--Hb_003847_050 Hb_008727_040 Hb_008727_040 Hb_012787_050--Hb_008727_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0306591 250.817 100.501 460.774 0.360682 0.608118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.524378 0.0550025 0.566111 706.579 138.745

CAGE analysis