Hb_000070_070

Information

Type -
Description -
Location Contig70: 138827-139564
Sequence    

Annotation

kegg
ID rcu:RCOM_1689290
description hypothetical protein
nr
ID XP_012086809.1
description PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
swissprot
ID A0MFL4
description Protein LURP-one-related 17 OS=Arabidopsis thaliana GN=At5g41590 PE=2 SV=2
trembl
ID B9RCI6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1689290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000070_070 0.0 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
2 Hb_012787_050 0.0735852658 - - PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
3 Hb_002236_010 0.0748502376 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
4 Hb_023956_010 0.0953775648 - - glutathione s-transferase, putative [Ricinus communis]
5 Hb_010417_090 0.0969353001 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
6 Hb_003964_060 0.100386744 - - PREDICTED: beta-glucosidase 40 [Jatropha curcas]
7 Hb_002553_070 0.1066934322 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
8 Hb_000856_250 0.1086438811 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_008727_040 0.1128799067 - - conserved hypothetical protein [Ricinus communis]
10 Hb_029866_080 0.1152161092 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
11 Hb_006846_030 0.1158764898 - - respiratory burst oxidase A [Manihot esculenta]
12 Hb_000069_520 0.1176216924 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
13 Hb_001799_090 0.1218288492 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
14 Hb_005679_120 0.1229712017 - - hypothetical protein RCOM_0284080 [Ricinus communis]
15 Hb_000676_170 0.1257071155 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
16 Hb_032260_130 0.1261241324 - - hypothetical protein POPTR_0003s13800g [Populus trichocarpa]
17 Hb_003847_050 0.1310108267 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
18 Hb_000032_340 0.1318804515 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
19 Hb_007625_030 0.1350792403 - - unknown [Medicago truncatula]
20 Hb_003371_040 0.1387932695 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]

Gene co-expression network

sample Hb_000070_070 Hb_000070_070 Hb_012787_050 Hb_012787_050 Hb_000070_070--Hb_012787_050 Hb_002236_010 Hb_002236_010 Hb_000070_070--Hb_002236_010 Hb_023956_010 Hb_023956_010 Hb_000070_070--Hb_023956_010 Hb_010417_090 Hb_010417_090 Hb_000070_070--Hb_010417_090 Hb_003964_060 Hb_003964_060 Hb_000070_070--Hb_003964_060 Hb_002553_070 Hb_002553_070 Hb_000070_070--Hb_002553_070 Hb_006846_030 Hb_006846_030 Hb_012787_050--Hb_006846_030 Hb_012787_050--Hb_023956_010 Hb_002333_010 Hb_002333_010 Hb_012787_050--Hb_002333_010 Hb_003847_050 Hb_003847_050 Hb_012787_050--Hb_003847_050 Hb_008727_040 Hb_008727_040 Hb_012787_050--Hb_008727_040 Hb_002236_010--Hb_002553_070 Hb_005679_120 Hb_005679_120 Hb_002236_010--Hb_005679_120 Hb_002236_010--Hb_023956_010 Hb_000571_060 Hb_000571_060 Hb_002236_010--Hb_000571_060 Hb_007625_030 Hb_007625_030 Hb_002236_010--Hb_007625_030 Hb_023956_010--Hb_003847_050 Hb_023956_010--Hb_002553_070 Hb_023956_010--Hb_006846_030 Hb_019026_050 Hb_019026_050 Hb_023956_010--Hb_019026_050 Hb_000115_290 Hb_000115_290 Hb_010417_090--Hb_000115_290 Hb_002970_070 Hb_002970_070 Hb_010417_090--Hb_002970_070 Hb_000994_100 Hb_000994_100 Hb_010417_090--Hb_000994_100 Hb_000856_250 Hb_000856_250 Hb_010417_090--Hb_000856_250 Hb_010417_090--Hb_002236_010 Hb_003964_060--Hb_008727_040 Hb_002025_050 Hb_002025_050 Hb_003964_060--Hb_002025_050 Hb_003964_060--Hb_023956_010 Hb_000676_170 Hb_000676_170 Hb_003964_060--Hb_000676_170 Hb_000749_160 Hb_000749_160 Hb_003964_060--Hb_000749_160 Hb_002553_070--Hb_000571_060 Hb_002553_070--Hb_019026_050 Hb_002553_070--Hb_005679_120 Hb_002553_070--Hb_006846_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.282985 0.145776 0.814767 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.535569 0.135605

CAGE analysis