Hb_003847_050

Information

Type -
Description -
Location Contig3847: 30023-35911
Sequence    

Annotation

kegg
ID pop:POPTR_0013s05030g
description POPTRDRAFT_729942; aquaporin SIP1.2 family protein
nr
ID XP_012092712.1
description PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
swissprot
ID Q5VR89
description Aquaporin SIP1-1 OS=Oryza sativa subsp. japonica GN=SIP1-1 PE=2 SV=2
trembl
ID B9I5U1
description Aquaporin SIP1.2 family protein OS=Populus trichocarpa GN=POPTR_0013s05030g PE=3 SV=2
Gene Ontology
ID GO:0016021
description aquaporin sip1-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38716: 30004-35857
cDNA
(Sanger)
(ID:Location)		 005_G09.ab1: 30311-35857 , 044_C15.ab1: 30189-35737

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003847_050 0.0 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
2 Hb_023956_010 0.056407845 - - glutathione s-transferase, putative [Ricinus communis]
3 Hb_006846_030 0.0595331475 - - respiratory burst oxidase A [Manihot esculenta]
4 Hb_001568_010 0.0877261476 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012787_050 0.0885245819 - - PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
6 Hb_019026_050 0.0925370069 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002448_020 0.1001477357 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
8 Hb_001114_120 0.1012853597 - - protein with unknown function [Ricinus communis]
9 Hb_000112_050 0.1023649408 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
10 Hb_002553_070 0.1029060109 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
11 Hb_001040_200 0.1105726613 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
12 Hb_011129_020 0.1119895103 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
13 Hb_000594_160 0.1127881987 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
14 Hb_004079_100 0.1206922744 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
15 Hb_022250_160 0.1208874789 - - respiratory burst oxidase A [Manihot esculenta]
16 Hb_000014_080 0.1208905778 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
17 Hb_002333_010 0.1225177248 - - hypothetical protein JCGZ_18834 [Jatropha curcas]
18 Hb_000963_010 0.1244028945 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
19 Hb_002236_010 0.124640069 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
20 Hb_000210_140 0.125160253 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]

Gene co-expression network

sample Hb_003847_050 Hb_003847_050 Hb_023956_010 Hb_023956_010 Hb_003847_050--Hb_023956_010 Hb_006846_030 Hb_006846_030 Hb_003847_050--Hb_006846_030 Hb_001568_010 Hb_001568_010 Hb_003847_050--Hb_001568_010 Hb_012787_050 Hb_012787_050 Hb_003847_050--Hb_012787_050 Hb_019026_050 Hb_019026_050 Hb_003847_050--Hb_019026_050 Hb_002448_020 Hb_002448_020 Hb_003847_050--Hb_002448_020 Hb_002553_070 Hb_002553_070 Hb_023956_010--Hb_002553_070 Hb_023956_010--Hb_006846_030 Hb_023956_010--Hb_012787_050 Hb_002236_010 Hb_002236_010 Hb_023956_010--Hb_002236_010 Hb_023956_010--Hb_019026_050 Hb_006846_030--Hb_012787_050 Hb_006846_030--Hb_001568_010 Hb_006846_030--Hb_002448_020 Hb_006846_030--Hb_019026_050 Hb_004282_010 Hb_004282_010 Hb_001568_010--Hb_004282_010 Hb_008727_040 Hb_008727_040 Hb_001568_010--Hb_008727_040 Hb_001568_010--Hb_012787_050 Hb_000014_080 Hb_000014_080 Hb_001568_010--Hb_000014_080 Hb_000070_070 Hb_000070_070 Hb_012787_050--Hb_000070_070 Hb_002333_010 Hb_002333_010 Hb_012787_050--Hb_002333_010 Hb_012787_050--Hb_008727_040 Hb_019026_050--Hb_002553_070 Hb_000120_320 Hb_000120_320 Hb_019026_050--Hb_000120_320 Hb_007632_130 Hb_007632_130 Hb_019026_050--Hb_007632_130 Hb_065521_010 Hb_065521_010 Hb_002448_020--Hb_065521_010 Hb_007386_030 Hb_007386_030 Hb_002448_020--Hb_007386_030 Hb_007875_020 Hb_007875_020 Hb_002448_020--Hb_007875_020 Hb_001114_120 Hb_001114_120 Hb_002448_020--Hb_001114_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 14.3307 13.1609 33.2047 0.0562624 0.0611329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0437083 0.06876 0.0637449 35.0374 12.2649

CAGE analysis