Hb_007386_030

Information

Type -
Description -
Location Contig7386: 66138-71347
Sequence    

Annotation

kegg
ID pop:POPTR_0017s04260g
description POPTRDRAFT_668286; hypothetical protein
nr
ID XP_012075391.1
description PREDICTED: formin-like protein 2 [Jatropha curcas]
swissprot
ID Q9SE97
description Formin-like protein 1 OS=Arabidopsis thaliana GN=FH1 PE=1 SV=1
trembl
ID A0A067KTH5
description Formin-like protein OS=Jatropha curcas GN=JCGZ_10673 PE=3 SV=1
Gene Ontology
ID GO:0048507
description formin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56270: 65500-65988 , PASA_asmbl_56272: 66654-71371
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007386_030 0.0 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
2 Hb_000594_160 0.079893463 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
3 Hb_007875_020 0.0830186231 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
4 Hb_005731_070 0.0884660239 - - conserved hypothetical protein [Ricinus communis]
5 Hb_065521_010 0.0918173371 - - PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]
6 Hb_001040_200 0.0945105496 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
7 Hb_008566_080 0.0985912834 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
8 Hb_002448_020 0.0999140558 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
9 Hb_022250_160 0.0999821879 - - respiratory burst oxidase A [Manihot esculenta]
10 Hb_000014_080 0.1013422254 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
11 Hb_005766_010 0.1015994503 - - serine carboxypeptidase, putative [Ricinus communis]
12 Hb_008175_050 0.1036889922 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
13 Hb_007017_100 0.1049907908 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
14 Hb_029510_090 0.1056555008 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
15 Hb_000866_190 0.1082925086 - - transcription factor, putative [Ricinus communis]
16 Hb_001114_120 0.1112800221 - - protein with unknown function [Ricinus communis]
17 Hb_004079_100 0.1117833796 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
18 Hb_003656_090 0.1174422992 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
19 Hb_004282_010 0.1179431918 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
20 Hb_005663_090 0.1179681011 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]

Gene co-expression network

sample Hb_007386_030 Hb_007386_030 Hb_000594_160 Hb_000594_160 Hb_007386_030--Hb_000594_160 Hb_007875_020 Hb_007875_020 Hb_007386_030--Hb_007875_020 Hb_005731_070 Hb_005731_070 Hb_007386_030--Hb_005731_070 Hb_065521_010 Hb_065521_010 Hb_007386_030--Hb_065521_010 Hb_001040_200 Hb_001040_200 Hb_007386_030--Hb_001040_200 Hb_008566_080 Hb_008566_080 Hb_007386_030--Hb_008566_080 Hb_005766_010 Hb_005766_010 Hb_000594_160--Hb_005766_010 Hb_000594_160--Hb_001040_200 Hb_000594_160--Hb_005731_070 Hb_004079_100 Hb_004079_100 Hb_000594_160--Hb_004079_100 Hb_000866_190 Hb_000866_190 Hb_000594_160--Hb_000866_190 Hb_007875_020--Hb_065521_010 Hb_007017_100 Hb_007017_100 Hb_007875_020--Hb_007017_100 Hb_029510_090 Hb_029510_090 Hb_007875_020--Hb_029510_090 Hb_168319_060 Hb_168319_060 Hb_007875_020--Hb_168319_060 Hb_002448_020 Hb_002448_020 Hb_007875_020--Hb_002448_020 Hb_000011_370 Hb_000011_370 Hb_005731_070--Hb_000011_370 Hb_005731_070--Hb_007017_100 Hb_000714_060 Hb_000714_060 Hb_005731_070--Hb_000714_060 Hb_000014_080 Hb_000014_080 Hb_005731_070--Hb_000014_080 Hb_065521_010--Hb_029510_090 Hb_065521_010--Hb_002448_020 Hb_065521_010--Hb_168319_060 Hb_014967_020 Hb_014967_020 Hb_065521_010--Hb_014967_020 Hb_022250_160 Hb_022250_160 Hb_001040_200--Hb_022250_160 Hb_004282_010 Hb_004282_010 Hb_001040_200--Hb_004282_010 Hb_001040_200--Hb_004079_100 Hb_001040_200--Hb_002448_020 Hb_008566_080--Hb_004079_100 Hb_008566_080--Hb_000011_370 Hb_008566_080--Hb_000014_080 Hb_008566_080--Hb_022250_160 Hb_003411_020 Hb_003411_020 Hb_008566_080--Hb_003411_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.323902 4.72512 9.55631 16.7192 0.0390558 0.0121243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.137209 0.0959752 0 16.2208 9.74374

CAGE analysis