Hb_004079_100

Information

Type -
Description -
Location Contig4079: 62722-67224
Sequence    

Annotation

kegg
ID rcu:RCOM_1053110
description hypothetical protein
nr
ID XP_012076674.1
description PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
swissprot
ID P53990
description IST1 homolog OS=Homo sapiens GN=IST1 PE=1 SV=1
trembl
ID A0A067KBX8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07233 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40367: 64358-64880 , PASA_asmbl_40368: 64881-67253
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004079_100 0.0 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
2 Hb_022250_160 0.0769343104 - - respiratory burst oxidase A [Manihot esculenta]
3 Hb_011129_020 0.0987369142 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
4 Hb_003411_020 0.0987384039 - - alpha-glucosidase, putative [Ricinus communis]
5 Hb_008566_080 0.1023484462 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
6 Hb_000120_320 0.1031256955 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000594_160 0.103181381 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
8 Hb_001040_200 0.1037378991 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
9 Hb_000398_140 0.1101463266 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
10 Hb_005357_120 0.1115414511 transcription factor TF Family: MYB-related -
11 Hb_007386_030 0.1117833796 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
12 Hb_007625_030 0.1123308234 - - unknown [Medicago truncatula]
13 Hb_001189_100 0.1126182342 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]
14 Hb_005766_010 0.1179274648 - - serine carboxypeptidase, putative [Ricinus communis]
15 Hb_019026_050 0.1180189223 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000003_020 0.1202339709 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
17 Hb_003656_090 0.1205649937 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
18 Hb_003847_050 0.1206922744 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
19 Hb_001677_090 0.1255076405 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
20 Hb_005839_030 0.1270465699 - - PREDICTED: potassium transporter 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004079_100 Hb_004079_100 Hb_022250_160 Hb_022250_160 Hb_004079_100--Hb_022250_160 Hb_011129_020 Hb_011129_020 Hb_004079_100--Hb_011129_020 Hb_003411_020 Hb_003411_020 Hb_004079_100--Hb_003411_020 Hb_008566_080 Hb_008566_080 Hb_004079_100--Hb_008566_080 Hb_000120_320 Hb_000120_320 Hb_004079_100--Hb_000120_320 Hb_000594_160 Hb_000594_160 Hb_004079_100--Hb_000594_160 Hb_007416_290 Hb_007416_290 Hb_022250_160--Hb_007416_290 Hb_001040_200 Hb_001040_200 Hb_022250_160--Hb_001040_200 Hb_007386_030 Hb_007386_030 Hb_022250_160--Hb_007386_030 Hb_022250_160--Hb_008566_080 Hb_022250_160--Hb_000594_160 Hb_023956_010 Hb_023956_010 Hb_011129_020--Hb_023956_010 Hb_005144_080 Hb_005144_080 Hb_011129_020--Hb_005144_080 Hb_003847_050 Hb_003847_050 Hb_011129_020--Hb_003847_050 Hb_000479_230 Hb_000479_230 Hb_011129_020--Hb_000479_230 Hb_007625_030 Hb_007625_030 Hb_011129_020--Hb_007625_030 Hb_007479_080 Hb_007479_080 Hb_003411_020--Hb_007479_080 Hb_003411_020--Hb_008566_080 Hb_002999_080 Hb_002999_080 Hb_003411_020--Hb_002999_080 Hb_001677_090 Hb_001677_090 Hb_003411_020--Hb_001677_090 Hb_000398_140 Hb_000398_140 Hb_003411_020--Hb_000398_140 Hb_008566_080--Hb_007386_030 Hb_000011_370 Hb_000011_370 Hb_008566_080--Hb_000011_370 Hb_000014_080 Hb_000014_080 Hb_008566_080--Hb_000014_080 Hb_149055_010 Hb_149055_010 Hb_000120_320--Hb_149055_010 Hb_000181_260 Hb_000181_260 Hb_000120_320--Hb_000181_260 Hb_000120_320--Hb_001677_090 Hb_002641_140 Hb_002641_140 Hb_000120_320--Hb_002641_140 Hb_019026_050 Hb_019026_050 Hb_000120_320--Hb_019026_050 Hb_001138_070 Hb_001138_070 Hb_000120_320--Hb_001138_070 Hb_005766_010 Hb_005766_010 Hb_000594_160--Hb_005766_010 Hb_000594_160--Hb_007386_030 Hb_000594_160--Hb_001040_200 Hb_005731_070 Hb_005731_070 Hb_000594_160--Hb_005731_070 Hb_000866_190 Hb_000866_190 Hb_000594_160--Hb_000866_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0682305 3.74254 5.49558 10.2924 0.0996614 0.252675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0837938 0.276936 0.0754949 8.37594 4.097

CAGE analysis