Hb_008566_080

Information

Type -
Description -
Location Contig8566: 76074-87078
Sequence    

Annotation

kegg
ID fve:101306742
description uncharacterized protein LOC101306742
nr
ID XP_012089451.1
description PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
swissprot
ID Q3ECP7
description Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2
trembl
ID A0A067JHY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23394 PE=3 SV=1
Gene Ontology
ID GO:0016021
description sugar transporter erd6-like 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60635: 76045-81056 , PASA_asmbl_60636: 82253-86168 , PASA_asmbl_60637: 82282-83588 , PASA_asmbl_60639: 82730-83159 , PASA_asmbl_60640: 83198-83705
cDNA
(Sanger)
(ID:Location)		 024_J05.ab1: 84182-86144 , 031_B23.ab1: 84173-86168

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008566_080 0.0 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
2 Hb_007386_030 0.0985912834 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
3 Hb_004079_100 0.1023484462 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
4 Hb_000011_370 0.1043474975 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
5 Hb_000014_080 0.1053282585 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
6 Hb_022250_160 0.1062874686 - - respiratory burst oxidase A [Manihot esculenta]
7 Hb_003411_020 0.1105990519 - - alpha-glucosidase, putative [Ricinus communis]
8 Hb_000956_070 0.118039444 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
9 Hb_001677_090 0.1184347326 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
10 Hb_005731_070 0.121468139 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004667_030 0.1225255822 - - hypothetical protein VITISV_034568 [Vitis vinifera]
12 Hb_002448_020 0.1262135095 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
13 Hb_003656_090 0.1295602576 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
14 Hb_000120_320 0.1300966616 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_008175_050 0.1306613846 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
16 Hb_001040_200 0.1311422681 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
17 Hb_000594_160 0.1343595788 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
18 Hb_001138_070 0.1354987581 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
19 Hb_007875_020 0.1358471445 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
20 Hb_000003_020 0.1365081036 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]

Gene co-expression network

sample Hb_008566_080 Hb_008566_080 Hb_007386_030 Hb_007386_030 Hb_008566_080--Hb_007386_030 Hb_004079_100 Hb_004079_100 Hb_008566_080--Hb_004079_100 Hb_000011_370 Hb_000011_370 Hb_008566_080--Hb_000011_370 Hb_000014_080 Hb_000014_080 Hb_008566_080--Hb_000014_080 Hb_022250_160 Hb_022250_160 Hb_008566_080--Hb_022250_160 Hb_003411_020 Hb_003411_020 Hb_008566_080--Hb_003411_020 Hb_000594_160 Hb_000594_160 Hb_007386_030--Hb_000594_160 Hb_007875_020 Hb_007875_020 Hb_007386_030--Hb_007875_020 Hb_005731_070 Hb_005731_070 Hb_007386_030--Hb_005731_070 Hb_065521_010 Hb_065521_010 Hb_007386_030--Hb_065521_010 Hb_001040_200 Hb_001040_200 Hb_007386_030--Hb_001040_200 Hb_004079_100--Hb_022250_160 Hb_011129_020 Hb_011129_020 Hb_004079_100--Hb_011129_020 Hb_004079_100--Hb_003411_020 Hb_000120_320 Hb_000120_320 Hb_004079_100--Hb_000120_320 Hb_004079_100--Hb_000594_160 Hb_000011_370--Hb_005731_070 Hb_000749_120 Hb_000749_120 Hb_000011_370--Hb_000749_120 Hb_000714_060 Hb_000714_060 Hb_000011_370--Hb_000714_060 Hb_000011_370--Hb_000014_080 Hb_001597_030 Hb_001597_030 Hb_000011_370--Hb_001597_030 Hb_004282_010 Hb_004282_010 Hb_000014_080--Hb_004282_010 Hb_000956_070 Hb_000956_070 Hb_000014_080--Hb_000956_070 Hb_001568_010 Hb_001568_010 Hb_000014_080--Hb_001568_010 Hb_000014_080--Hb_005731_070 Hb_006501_100 Hb_006501_100 Hb_000014_080--Hb_006501_100 Hb_000014_080--Hb_007386_030 Hb_007416_290 Hb_007416_290 Hb_022250_160--Hb_007416_290 Hb_022250_160--Hb_001040_200 Hb_022250_160--Hb_007386_030 Hb_022250_160--Hb_000594_160 Hb_007479_080 Hb_007479_080 Hb_003411_020--Hb_007479_080 Hb_002999_080 Hb_002999_080 Hb_003411_020--Hb_002999_080 Hb_001677_090 Hb_001677_090 Hb_003411_020--Hb_001677_090 Hb_000398_140 Hb_000398_140 Hb_003411_020--Hb_000398_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0856239 4.58421 8.61406 18.2384 0.0835893 0.0661385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.95092 0.277593 0.0230667 13.0055 8.20644

CAGE analysis