Hb_011129_020

Information

Type -
Description -
Location Contig11129: 25674-31463
Sequence    

Annotation

kegg
ID rcu:RCOM_1314290
description Beta-1,3-galactosyltransferase sqv-2, putative (EC:2.4.1.134)
nr
ID XP_002518935.1
description Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
swissprot
ID Q9MAP8
description Probable beta-1,3-galactosyltransferase 6 OS=Arabidopsis thaliana GN=B3GALT6 PE=2 SV=1
trembl
ID B9RYW6
description Beta-1,3-galactosyltransferase sqv-2, putative OS=Ricinus communis GN=RCOM_1314290 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable beta- -galactosyltransferase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03454: 25702-31344 , PASA_asmbl_03455: 25702-31458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011129_020 0.0 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
2 Hb_004079_100 0.0987369142 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
3 Hb_023956_010 0.1110744687 - - glutathione s-transferase, putative [Ricinus communis]
4 Hb_005144_080 0.111111296 - - Serine carboxypeptidase, putative [Ricinus communis]
5 Hb_003847_050 0.1119895103 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
6 Hb_000479_230 0.1139282206 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
7 Hb_007625_030 0.1146477239 - - unknown [Medicago truncatula]
8 Hb_010164_020 0.1157540757 - - PREDICTED: abscisate beta-glucosyltransferase-like [Jatropha curcas]
9 Hb_022250_160 0.1220279973 - - respiratory burst oxidase A [Manihot esculenta]
10 Hb_000594_160 0.1231699239 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
11 Hb_005839_030 0.1257214125 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
12 Hb_005357_120 0.1268420149 transcription factor TF Family: MYB-related -
13 Hb_001040_200 0.1276519374 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
14 Hb_005489_120 0.1298767312 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
15 Hb_002028_160 0.1312113356 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Populus euphratica]
16 Hb_001114_120 0.1340445932 - - protein with unknown function [Ricinus communis]
17 Hb_002450_180 0.1342188396 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005766_010 0.1356315624 - - serine carboxypeptidase, putative [Ricinus communis]
19 Hb_009627_020 0.1377419596 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
20 Hb_002003_010 0.1378106784 - - hypothetical protein JCGZ_15062 [Jatropha curcas]

Gene co-expression network

sample Hb_011129_020 Hb_011129_020 Hb_004079_100 Hb_004079_100 Hb_011129_020--Hb_004079_100 Hb_023956_010 Hb_023956_010 Hb_011129_020--Hb_023956_010 Hb_005144_080 Hb_005144_080 Hb_011129_020--Hb_005144_080 Hb_003847_050 Hb_003847_050 Hb_011129_020--Hb_003847_050 Hb_000479_230 Hb_000479_230 Hb_011129_020--Hb_000479_230 Hb_007625_030 Hb_007625_030 Hb_011129_020--Hb_007625_030 Hb_022250_160 Hb_022250_160 Hb_004079_100--Hb_022250_160 Hb_003411_020 Hb_003411_020 Hb_004079_100--Hb_003411_020 Hb_008566_080 Hb_008566_080 Hb_004079_100--Hb_008566_080 Hb_000120_320 Hb_000120_320 Hb_004079_100--Hb_000120_320 Hb_000594_160 Hb_000594_160 Hb_004079_100--Hb_000594_160 Hb_023956_010--Hb_003847_050 Hb_002553_070 Hb_002553_070 Hb_023956_010--Hb_002553_070 Hb_006846_030 Hb_006846_030 Hb_023956_010--Hb_006846_030 Hb_012787_050 Hb_012787_050 Hb_023956_010--Hb_012787_050 Hb_002236_010 Hb_002236_010 Hb_023956_010--Hb_002236_010 Hb_019026_050 Hb_019026_050 Hb_023956_010--Hb_019026_050 Hb_002025_380 Hb_002025_380 Hb_005144_080--Hb_002025_380 Hb_006277_030 Hb_006277_030 Hb_005144_080--Hb_006277_030 Hb_004282_010 Hb_004282_010 Hb_005144_080--Hb_004282_010 Hb_005731_070 Hb_005731_070 Hb_005144_080--Hb_005731_070 Hb_005839_030 Hb_005839_030 Hb_005144_080--Hb_005839_030 Hb_003847_050--Hb_006846_030 Hb_001568_010 Hb_001568_010 Hb_003847_050--Hb_001568_010 Hb_003847_050--Hb_012787_050 Hb_003847_050--Hb_019026_050 Hb_002448_020 Hb_002448_020 Hb_003847_050--Hb_002448_020 Hb_009627_020 Hb_009627_020 Hb_000479_230--Hb_009627_020 Hb_005679_120 Hb_005679_120 Hb_000479_230--Hb_005679_120 Hb_010164_020 Hb_010164_020 Hb_000479_230--Hb_010164_020 Hb_000479_230--Hb_023956_010 Hb_000676_170 Hb_000676_170 Hb_000479_230--Hb_000676_170 Hb_003216_140 Hb_003216_140 Hb_000479_230--Hb_003216_140 Hb_007625_030--Hb_002236_010 Hb_007625_030--Hb_002553_070 Hb_007625_030--Hb_023956_010 Hb_007625_030--Hb_009627_020 Hb_007625_030--Hb_004079_100 Hb_000454_200 Hb_000454_200 Hb_007625_030--Hb_000454_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.106751 6.9021 9.34583 15.9029 0.0104398 0.119039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.260687 0.261052 0.211901 15.9194 3.89611

CAGE analysis