Hb_005679_120

Information

Type -
Description -
Location Contig5679: 314682-315521
Sequence    

Annotation

kegg
ID rcu:RCOM_0284080
description hypothetical protein
nr
ID XP_002533830.1
description hypothetical protein RCOM_0284080 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T6G1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0284080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005679_120 0.0 - - hypothetical protein RCOM_0284080 [Ricinus communis]
2 Hb_002236_010 0.0797842968 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
3 Hb_000479_230 0.0820438368 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
4 Hb_009627_020 0.0879162822 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
5 Hb_000454_200 0.1003931522 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
6 Hb_002553_070 0.1012631817 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
7 Hb_023956_010 0.1020334315 - - glutathione s-transferase, putative [Ricinus communis]
8 Hb_003216_140 0.102692295 - - F-box protein SNE, putative [Ricinus communis]
9 Hb_004659_100 0.1092827807 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000571_060 0.1105546409 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
11 Hb_009838_120 0.1118324129 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
12 Hb_007625_030 0.115101054 - - unknown [Medicago truncatula]
13 Hb_000411_020 0.117285033 - - cytochrome P450, putative [Ricinus communis]
14 Hb_000631_100 0.1193026633 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
15 Hb_024868_010 0.1193843185 - - protein kinase, putative [Ricinus communis]
16 Hb_189208_050 0.1199005347 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
17 Hb_002641_140 0.1215999653 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_008021_040 0.1218405977 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
19 Hb_000070_070 0.1229712017 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
20 Hb_002450_180 0.1269120257 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005679_120 Hb_005679_120 Hb_002236_010 Hb_002236_010 Hb_005679_120--Hb_002236_010 Hb_000479_230 Hb_000479_230 Hb_005679_120--Hb_000479_230 Hb_009627_020 Hb_009627_020 Hb_005679_120--Hb_009627_020 Hb_000454_200 Hb_000454_200 Hb_005679_120--Hb_000454_200 Hb_002553_070 Hb_002553_070 Hb_005679_120--Hb_002553_070 Hb_023956_010 Hb_023956_010 Hb_005679_120--Hb_023956_010 Hb_002236_010--Hb_002553_070 Hb_000070_070 Hb_000070_070 Hb_002236_010--Hb_000070_070 Hb_002236_010--Hb_023956_010 Hb_000571_060 Hb_000571_060 Hb_002236_010--Hb_000571_060 Hb_007625_030 Hb_007625_030 Hb_002236_010--Hb_007625_030 Hb_000479_230--Hb_009627_020 Hb_010164_020 Hb_010164_020 Hb_000479_230--Hb_010164_020 Hb_000479_230--Hb_023956_010 Hb_000676_170 Hb_000676_170 Hb_000479_230--Hb_000676_170 Hb_003216_140 Hb_003216_140 Hb_000479_230--Hb_003216_140 Hb_009838_120 Hb_009838_120 Hb_009627_020--Hb_009838_120 Hb_024868_010 Hb_024868_010 Hb_009627_020--Hb_024868_010 Hb_004659_100 Hb_004659_100 Hb_009627_020--Hb_004659_100 Hb_000631_100 Hb_000631_100 Hb_009627_020--Hb_000631_100 Hb_002450_180 Hb_002450_180 Hb_000454_200--Hb_002450_180 Hb_000847_050 Hb_000847_050 Hb_000454_200--Hb_000847_050 Hb_003376_300 Hb_003376_300 Hb_000454_200--Hb_003376_300 Hb_000411_050 Hb_000411_050 Hb_000454_200--Hb_000411_050 Hb_001856_160 Hb_001856_160 Hb_000454_200--Hb_001856_160 Hb_002553_070--Hb_023956_010 Hb_002553_070--Hb_000571_060 Hb_019026_050 Hb_019026_050 Hb_002553_070--Hb_019026_050 Hb_006846_030 Hb_006846_030 Hb_002553_070--Hb_006846_030 Hb_003847_050 Hb_003847_050 Hb_023956_010--Hb_003847_050 Hb_023956_010--Hb_006846_030 Hb_012787_050 Hb_012787_050 Hb_023956_010--Hb_012787_050 Hb_023956_010--Hb_019026_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.49262 1.40923 3.36557 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.98559 0.494049

CAGE analysis