Hb_003376_300

Information

Type -
Description -
Location Contig3376: 202534-204139
Sequence    

Annotation

kegg
ID rcu:RCOM_1356060
description Aquaporin PIP2.2, putative
nr
ID XP_002519539.1
description Aquaporin PIP2.2, putative [Ricinus communis]
swissprot
ID Q6K215
description Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1
trembl
ID B9S0M0
description Aquaporin PIP2.2, putative OS=Ricinus communis GN=RCOM_1356060 PE=3 SV=1
Gene Ontology
ID GO:0016021
description aquaporin pip2-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35355: 202540-204098 , PASA_asmbl_35356: 202925-204098
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_300 0.0 - - Aquaporin PIP2.2, putative [Ricinus communis]
2 Hb_000454_200 0.0903343554 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
3 Hb_005087_030 0.0965747232 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
4 Hb_002450_180 0.1018244181 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002028_160 0.1018339498 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Populus euphratica]
6 Hb_166009_010 0.1022485433 - - carbonyl reductase, putative [Ricinus communis]
7 Hb_001856_160 0.1072431941 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000847_050 0.1105666295 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
9 Hb_000497_100 0.1122851527 - - respiratory burst oxidase D [Manihot esculenta]
10 Hb_131662_010 0.1124852328 - - Insulin-degrading enzyme, putative [Ricinus communis]
11 Hb_006634_090 0.11371658 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
12 Hb_130967_010 0.1205533062 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_004129_110 0.1219639075 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
14 Hb_000022_280 0.1240377557 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
15 Hb_008959_050 0.1278242976 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]
16 Hb_006153_130 0.128064585 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_005357_020 0.1289938917 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010417_100 0.1299165339 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
19 Hb_020285_010 0.1300753365 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
20 Hb_000411_050 0.1321463531 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]

Gene co-expression network

sample Hb_003376_300 Hb_003376_300 Hb_000454_200 Hb_000454_200 Hb_003376_300--Hb_000454_200 Hb_005087_030 Hb_005087_030 Hb_003376_300--Hb_005087_030 Hb_002450_180 Hb_002450_180 Hb_003376_300--Hb_002450_180 Hb_002028_160 Hb_002028_160 Hb_003376_300--Hb_002028_160 Hb_166009_010 Hb_166009_010 Hb_003376_300--Hb_166009_010 Hb_001856_160 Hb_001856_160 Hb_003376_300--Hb_001856_160 Hb_000454_200--Hb_002450_180 Hb_000847_050 Hb_000847_050 Hb_000454_200--Hb_000847_050 Hb_005679_120 Hb_005679_120 Hb_000454_200--Hb_005679_120 Hb_000411_050 Hb_000411_050 Hb_000454_200--Hb_000411_050 Hb_000454_200--Hb_001856_160 Hb_168068_010 Hb_168068_010 Hb_005087_030--Hb_168068_010 Hb_131662_010 Hb_131662_010 Hb_005087_030--Hb_131662_010 Hb_005087_030--Hb_002450_180 Hb_005087_030--Hb_000411_050 Hb_000771_030 Hb_000771_030 Hb_005087_030--Hb_000771_030 Hb_002450_180--Hb_000411_050 Hb_002450_180--Hb_000847_050 Hb_000946_050 Hb_000946_050 Hb_002450_180--Hb_000946_050 Hb_006634_090 Hb_006634_090 Hb_002450_180--Hb_006634_090 Hb_000069_520 Hb_000069_520 Hb_002028_160--Hb_000069_520 Hb_011129_020 Hb_011129_020 Hb_002028_160--Hb_011129_020 Hb_000317_230 Hb_000317_230 Hb_002028_160--Hb_000317_230 Hb_002028_160--Hb_000454_200 Hb_000832_280 Hb_000832_280 Hb_002028_160--Hb_000832_280 Hb_000009_130 Hb_000009_130 Hb_166009_010--Hb_000009_130 Hb_039022_020 Hb_039022_020 Hb_166009_010--Hb_039022_020 Hb_004129_110 Hb_004129_110 Hb_166009_010--Hb_004129_110 Hb_011472_020 Hb_011472_020 Hb_166009_010--Hb_011472_020 Hb_000022_280 Hb_000022_280 Hb_166009_010--Hb_000022_280 Hb_001799_090 Hb_001799_090 Hb_001856_160--Hb_001799_090 Hb_006153_130 Hb_006153_130 Hb_001856_160--Hb_006153_130 Hb_002289_110 Hb_002289_110 Hb_001856_160--Hb_002289_110 Hb_005489_120 Hb_005489_120 Hb_001856_160--Hb_005489_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.359403 197.169 110.488 202.607 0.260899 0.263723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.44009 0.203334 0.0542454 223.173 44.1903

CAGE analysis