Hb_002289_110

Information

Type -
Description -
Location Contig2289: 98818-103010
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05570g
description POPTRDRAFT_808447; leucine-rich repeat transmembrane protein kinase
nr
ID XP_012086152.1
description PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
swissprot
ID O22938
description Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 OS=Arabidopsis thaliana GN=PXC3 PE=2 SV=1
trembl
ID A0A067JT90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21081 PE=4 SV=1
Gene Ontology
ID GO:0004672
description leucine-rich repeat receptor-like tyrosine-protein kinase at2g41820

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23857: 98988-99138 , PASA_asmbl_23858: 99195-99709 , PASA_asmbl_23859: 99925-100282 , PASA_asmbl_23861: 100995-102549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002289_110 0.0 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
2 Hb_001799_090 0.0815651436 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
3 Hb_005237_070 0.1073420725 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
4 Hb_001856_160 0.1082326124 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001998_260 0.1106472447 - - cytochrome P450, putative [Ricinus communis]
6 Hb_029866_080 0.1109849272 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
7 Hb_028008_030 0.1135063508 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
8 Hb_000069_520 0.1148766085 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
9 Hb_001006_030 0.1250227245 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005144_100 0.1255675195 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
11 Hb_001821_030 0.1308982746 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
12 Hb_136884_010 0.1318641184 - - Disease resistance protein RFL1, putative [Ricinus communis]
13 Hb_183820_010 0.1368523418 - - Disease resistance protein RFL1, putative [Ricinus communis]
14 Hb_005489_120 0.1377233075 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
15 Hb_000586_100 0.1384746726 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006364_020 0.1414920883 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
17 Hb_000070_070 0.1417005503 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
18 Hb_000111_190 0.1438950162 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
19 Hb_001369_530 0.1470287525 - - 21 kDa protein precursor, putative [Ricinus communis]
20 Hb_003967_010 0.1477619484 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_002289_110 Hb_002289_110 Hb_001799_090 Hb_001799_090 Hb_002289_110--Hb_001799_090 Hb_005237_070 Hb_005237_070 Hb_002289_110--Hb_005237_070 Hb_001856_160 Hb_001856_160 Hb_002289_110--Hb_001856_160 Hb_001998_260 Hb_001998_260 Hb_002289_110--Hb_001998_260 Hb_029866_080 Hb_029866_080 Hb_002289_110--Hb_029866_080 Hb_028008_030 Hb_028008_030 Hb_002289_110--Hb_028008_030 Hb_001799_090--Hb_001998_260 Hb_001799_090--Hb_001856_160 Hb_001799_090--Hb_028008_030 Hb_000069_520 Hb_000069_520 Hb_001799_090--Hb_000069_520 Hb_005489_120 Hb_005489_120 Hb_001799_090--Hb_005489_120 Hb_005237_070--Hb_001856_160 Hb_005237_070--Hb_001799_090 Hb_005237_070--Hb_028008_030 Hb_005144_100 Hb_005144_100 Hb_005237_070--Hb_005144_100 Hb_005237_070--Hb_005489_120 Hb_006153_130 Hb_006153_130 Hb_001856_160--Hb_006153_130 Hb_003376_300 Hb_003376_300 Hb_001856_160--Hb_003376_300 Hb_001856_160--Hb_005489_120 Hb_000454_200 Hb_000454_200 Hb_001856_160--Hb_000454_200 Hb_001998_260--Hb_028008_030 Hb_001998_260--Hb_005144_100 Hb_003266_060 Hb_003266_060 Hb_001998_260--Hb_003266_060 Hb_039496_010 Hb_039496_010 Hb_001998_260--Hb_039496_010 Hb_001564_090 Hb_001564_090 Hb_029866_080--Hb_001564_090 Hb_012787_050 Hb_012787_050 Hb_029866_080--Hb_012787_050 Hb_000070_070 Hb_000070_070 Hb_029866_080--Hb_000070_070 Hb_029866_080--Hb_005489_120 Hb_005333_120 Hb_005333_120 Hb_029866_080--Hb_005333_120 Hb_003805_080 Hb_003805_080 Hb_028008_030--Hb_003805_080 Hb_000230_160 Hb_000230_160 Hb_028008_030--Hb_000230_160 Hb_028008_030--Hb_039496_010 Hb_003967_010 Hb_003967_010 Hb_028008_030--Hb_003967_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.279798 6.81612 1.82653 12.5244 0.183024 0.0630044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0115236 0 0.0348079 9.7616 1.04855

CAGE analysis