Hb_001856_160

Information

Type -
Description -
Location Contig1856: 212082-216249
Sequence    

Annotation

kegg
ID rcu:RCOM_0916650
description hypothetical protein
nr
ID XP_002530991.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SYC2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0916650 PE=4 SV=1
Gene Ontology
ID GO:0016772
description malectin receptor protein kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18162: 211820-212683 , PASA_asmbl_18163: 215622-216356
cDNA
(Sanger)
(ID:Location)		 003_L04.ab1: 215622-216356 , 004_M08.ab1: 215724-216354 , 010_H12.ab1: 212225-212438 , 013_O13.ab1: 215722-216356 , 032_M24.ab1: 211884-212467 , 040_I03.ab1: 211884-212467 , 041_E21.ab1: 211883-212467 , 045_I16.ab1: 211820-212514 , 050_G20.ab1: 215776-216356

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001856_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001799_090 0.0891903658 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
3 Hb_006153_130 0.0930666345 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_003376_300 0.1072431941 - - Aquaporin PIP2.2, putative [Ricinus communis]
5 Hb_002289_110 0.1082326124 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
6 Hb_005489_120 0.1089198993 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
7 Hb_000454_200 0.1123501157 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
8 Hb_000210_140 0.1145513973 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
9 Hb_000069_520 0.1176435778 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
10 Hb_130967_010 0.1188288031 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_000300_170 0.1209161238 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
12 Hb_003788_010 0.1220761223 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
13 Hb_000111_190 0.1223319306 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
14 Hb_001998_260 0.1237063847 - - cytochrome P450, putative [Ricinus communis]
15 Hb_006364_020 0.1255700683 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
16 Hb_005237_070 0.1263217074 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
17 Hb_000586_100 0.1289324978 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000847_050 0.1296599988 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
19 Hb_005144_100 0.1299570422 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
20 Hb_002236_010 0.1327920237 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]

Gene co-expression network

sample Hb_001856_160 Hb_001856_160 Hb_001799_090 Hb_001799_090 Hb_001856_160--Hb_001799_090 Hb_006153_130 Hb_006153_130 Hb_001856_160--Hb_006153_130 Hb_003376_300 Hb_003376_300 Hb_001856_160--Hb_003376_300 Hb_002289_110 Hb_002289_110 Hb_001856_160--Hb_002289_110 Hb_005489_120 Hb_005489_120 Hb_001856_160--Hb_005489_120 Hb_000454_200 Hb_000454_200 Hb_001856_160--Hb_000454_200 Hb_001799_090--Hb_002289_110 Hb_001998_260 Hb_001998_260 Hb_001799_090--Hb_001998_260 Hb_028008_030 Hb_028008_030 Hb_001799_090--Hb_028008_030 Hb_000069_520 Hb_000069_520 Hb_001799_090--Hb_000069_520 Hb_001799_090--Hb_005489_120 Hb_000210_140 Hb_000210_140 Hb_006153_130--Hb_000210_140 Hb_002236_010 Hb_002236_010 Hb_006153_130--Hb_002236_010 Hb_007625_030 Hb_007625_030 Hb_006153_130--Hb_007625_030 Hb_000847_050 Hb_000847_050 Hb_006153_130--Hb_000847_050 Hb_009615_100 Hb_009615_100 Hb_006153_130--Hb_009615_100 Hb_003376_300--Hb_000454_200 Hb_005087_030 Hb_005087_030 Hb_003376_300--Hb_005087_030 Hb_002450_180 Hb_002450_180 Hb_003376_300--Hb_002450_180 Hb_002028_160 Hb_002028_160 Hb_003376_300--Hb_002028_160 Hb_166009_010 Hb_166009_010 Hb_003376_300--Hb_166009_010 Hb_005237_070 Hb_005237_070 Hb_002289_110--Hb_005237_070 Hb_002289_110--Hb_001998_260 Hb_029866_080 Hb_029866_080 Hb_002289_110--Hb_029866_080 Hb_002289_110--Hb_028008_030 Hb_000300_170 Hb_000300_170 Hb_005489_120--Hb_000300_170 Hb_001053_110 Hb_001053_110 Hb_005489_120--Hb_001053_110 Hb_000676_170 Hb_000676_170 Hb_005489_120--Hb_000676_170 Hb_012787_050 Hb_012787_050 Hb_005489_120--Hb_012787_050 Hb_000022_280 Hb_000022_280 Hb_005489_120--Hb_000022_280 Hb_000454_200--Hb_002450_180 Hb_000454_200--Hb_000847_050 Hb_005679_120 Hb_005679_120 Hb_000454_200--Hb_005679_120 Hb_000411_050 Hb_000411_050 Hb_000454_200--Hb_000411_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.253263 30.7421 13.9406 44.63 0.589835 0.899199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 44.736 7.09221

CAGE analysis